Alternatives and similar repositories for protein-backbone-MCTS:

Users that are interested in protein-backbone-MCTS are comparing it to the libraries listed below

• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆37Updated 3 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆53Updated last month
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆28Updated 2 weeks ago
• liuyf020419 / SCUBA-D
  ☆56Updated 11 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆83Updated 3 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆51Updated last month
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆56Updated this week
• Kuhlman-Lab / evopro
  ☆74Updated last week
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 8 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆21Updated last year
• leeyang / DRfold
  ☆35Updated last year
• tyang816 / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers.
  ☆40Updated this week
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆24Updated 6 months ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated last week
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆45Updated 3 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆45Updated 3 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆57Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆65Updated 6 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆30Updated 7 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆42Updated 4 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆53Updated 9 months ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆35Updated 2 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆42Updated 3 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• Gonglab-THU / GeoStab
  ☆30Updated 5 months ago
• levinthal / Pallatom
  ☆88Updated 4 months ago
• PKUliujl / GeoSeqBuilder
  ☆25Updated last month
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆73Updated 9 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆28Updated 7 months ago