SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.
☆16Oct 28, 2026Updated this week
Alternatives and similar repositories for scallops
Users that are interested in scallops are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for interfacing with SpatialData stores in TS/JS☆11Updated this week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 7 months ago
- Analysis framework for morphological profiling data☆14Updated this week
- A toolkit to test, validate, and improve agentic skills.☆18Updated this week
- Links between modalities in mudata☆17Oct 16, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Holoviz Anndata Interface☆14Oct 19, 2026Updated last week
- Yet Another Ome-ZARR Schema❗️☆23Oct 21, 2026Updated last week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆26Updated this week
- Single-cell morphological analysis☆16Apr 23, 2026Updated 6 months ago
- Interface to the Bioformats Java library☆15Feb 17, 2026Updated 8 months ago
- ☆21Oct 15, 2026Updated last week
- AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated co…☆25Oct 11, 2026Updated 2 weeks ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Facilitating the use of Deep Visual Proteomics☆22Sep 16, 2026Updated last month
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- load ome-zarr files in xarray☆11Oct 19, 2026Updated last week
- a place to work on a specification for skeletons☆23Sep 14, 2026Updated last month
- ☆13Updated this week
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Oct 19, 2026Updated last week
- Agentic plugins to annotate SDRF using Claude; Codex; Cursor; Gemini☆19Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Updated this week
- Milume: explore spatial biology in your notebook. Layer images, cells, and transcripts in 3D, in one reactive widget.☆32Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dataframe-agnostic Zarr Storage powered by Narwhals☆10Dec 1, 2025Updated 10 months ago
- A GPU-accelerated web application for visualization, annotation and sharing of spatial biology data☆14Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 8 months ago
- a (type-safe) place for your arrows☆14Apr 8, 2026Updated 6 months ago
- Fast array utilities☆15Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆84Updated this week
- OMERO.web plugin for the Vitessce multimodal data viewer.☆14Jul 29, 2026Updated 3 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆14Sep 29, 2026Updated last month
- ☆20Sep 17, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Build contrasts for models defined with formulaic☆13Oct 19, 2026Updated last week
- Efficient data structures and IO for whole slide image analysis☆34Oct 1, 2026Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆72Updated this week
- HuBMAP Data Portal front end☆13Updated this week
- An AnnData-based framework for integrated proteomics analysis☆30Updated this week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Apr 28, 2021Updated 5 years ago