AstraZeneca / ibd-interpret
We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel disease. These predictive models can help us better understand the disease pathology and represent a step towards automated clinical recruitment strategies.
☆16Updated 2 years ago
Alternatives and similar repositories for ibd-interpret:
Users that are interested in ibd-interpret are comparing it to the libraries listed below
- Inference code for HoVer-NeXt☆31Updated last month
- A vision language model for gigapixel whole slide images in histopathology☆38Updated 6 months ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆36Updated last week
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆31Updated 2 months ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Updated 7 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆68Updated 8 months ago
- HIPPO 🦛 is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing o…☆12Updated 2 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆97Updated 2 months ago
- Solid Tumor Associative Modeling in Pathology☆68Updated this week
- A tool for rapidly labeling objects using deep learning feature embedding☆31Updated 7 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 8 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆74Updated this week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆17Updated 3 months ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 9 months ago
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding☆28Updated 6 months ago
- Data and code to accompany our Nature publication☆45Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆51Updated last year
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆49Updated last month
- Pipeline for computational pathology☆34Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated last year
- ☆23Updated last year
- ☆9Updated 8 months ago
- ☆40Updated 3 years ago
- ☆43Updated last year
- Accurate encoding of histologic images into StyleGAN space for discovery and explainability☆10Updated 4 months ago
- ☆31Updated 2 years ago
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- ☆91Updated last week
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 2 years ago