schatzlab / t2t-variantsView external linksLinks
☆22Aug 8, 2022Updated 3 years ago
Alternatives and similar repositories for t2t-variants
Users that are interested in t2t-variants are comparing it to the libraries listed below
Sorting:
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 4, 2024Updated 2 years ago
- Short Tandem Repeat disease loci resource☆25Feb 2, 2026Updated last week
- ☆16Mar 17, 2023Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jan 15, 2026Updated 3 weeks ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- ☆22Jul 27, 2023Updated 2 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- Tumor-normal variant calling workflow using HiFi reads☆27Dec 12, 2025Updated 2 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Jun 28, 2024Updated last year
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆23Jul 4, 2023Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated this week
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated last year
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 4 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 7 months ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Jan 26, 2024Updated 2 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆35Jun 17, 2024Updated last year
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Jan 12, 2024Updated 2 years ago
- a Medical Genetics Sequence Analysis Pipeline☆86Feb 6, 2026Updated last week
- An R package to plot interactive three-way differential expression analysis☆38Jan 14, 2026Updated last month
- Introduction to Reproducible Publications with Quarto☆11Jan 28, 2025Updated last year
- Repository for transferGWAS, a deep learning method for performing genome-wide association studies on full medical imaging data.☆14Jul 29, 2022Updated 3 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 4 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated 11 months ago
- Scalable genomic analysis pipelines, written in WDL☆11Updated this week
- Genetic Association Analysis Under Complex Survey Sampling☆13Nov 13, 2019Updated 6 years ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 5 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 2 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆12Dec 23, 2025Updated last month
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year