malariagen / pipelinesLinks
Pipelines for processing malaria parasite and mosquito genome sequence data.
☆14Updated last year
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below
Sorting:
- ☆29Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- MIRA sequence assembler☆31Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Simple bacterial assembly and annotation pipeline☆81Updated last week
- Bacterial Annotation by Learned Representation of Genes☆58Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated last month
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- ☆28Updated 5 years ago
- A package to annotate protein sequences☆60Updated 11 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- seqfu - Sequece Fastx Utilities☆126Updated this week
- Fully automated generation of UCSC assembly hubs☆35Updated last year