Pipelines for processing malaria parasite and mosquito genome sequence data.
☆15Nov 2, 2024Updated last year
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated last month
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆22Jan 20, 2025Updated last year
- Multiplex PCR design, in silico☆24Mar 4, 2025Updated last year
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transfer coordinates across genomes☆23Jun 12, 2026Updated last month
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆14Sep 3, 2019Updated 6 years ago
- Requests for comment for technology changes and other issues affecting lesson Maintainers.☆20Sep 22, 2021Updated 4 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- get full paper names for downloaded publications automatically☆22Feb 23, 2023Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GeoJSON data for the Ghana Map.☆11Mar 6, 2023Updated 3 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Apr 26, 2026Updated 2 months ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Lyrics plugin for AIMP music player☆13Dec 6, 2022Updated 3 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🧬 Efficient parallelized peta-scale protein database search☆39Jan 4, 2024Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- ☆44Mar 13, 2026Updated 4 months ago
- ☆20Jul 3, 2022Updated 4 years ago
- ☆16May 10, 2022Updated 4 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Jun 15, 2026Updated last month
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆28Dec 17, 2023Updated 2 years ago
- ☆14Sep 17, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- ☆12Apr 16, 2018Updated 8 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated 3 weeks ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- A basic science lab framework aimed at reproducibility and lab management.☆15May 22, 2026Updated 2 months ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago