sbl-sdsc / mmtf-sparkLinks
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
☆21Updated 6 years ago
Alternatives and similar repositories for mmtf-spark
Users that are interested in mmtf-spark are comparing it to the libraries listed below
Sorting:
- Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.☆68Updated 2 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2017☆19Updated 7 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2018☆60Updated 3 years ago
- A collection of useful tutorials for Protein Science☆108Updated 10 years ago
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- A Python framework for structural systems biology☆109Updated 4 years ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 3 years ago
- The specification of the MMTF format for biological structures☆44Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆353Updated 2 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆275Updated 5 months ago
- PSIPRED Protein Secondary Structure Predictor☆57Updated last month
- analyse PDB files, run molecular-dynamics & analyse trajectories☆61Updated 7 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 11 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆112Updated 2 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆63Updated last year
- ☆20Updated 4 years ago
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files☆178Updated 5 years ago
- Protein structure comparison tools such as SSAP and SNAP☆65Updated last year
- A library/plugin for handling 3D structural molecular data (not only) in the browser.☆158Updated 6 years ago
- ☆127Updated 9 years ago
- Software for the visualization of sequence-function relationships☆201Updated 2 months ago
- Glycan Analysis and Glycoinformatics Library for Python☆36Updated 3 months ago
- web-based protein structure viewer and analysis tool interactively or in batch mode☆168Updated this week
- A Python API for the RCSB Protein Data Bank (PDB)☆329Updated 2 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 6 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆24Updated 2 years ago
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆82Updated 6 months ago
- The Integrative Modeling Platform☆77Updated this week