Alternatives and similar repositories for mmtf-spark

Users that are interested in mmtf-spark are comparing it to the libraries listed below

• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆67Updated 2 years ago
• sbl-sdsc / mmtf-workshop-2017
  Structural Bioinformatics Training Workshop & Hackathon 2017
  ☆19Updated 7 years ago
• sbl-sdsc / mmtf-workshop-2018
  Structural Bioinformatics Training Workshop & Hackathon 2018
  ☆60Updated 3 years ago
• rcsb / mmtf-python
  The python implementation of the MMTF API, decoder and encoder.
  ☆46Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 2 weeks ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆27Updated 9 months ago
• boscoh / pdbremix
  analyse PDB files, run molecular-dynamics & analyse trajectories
  ☆61Updated 7 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• soedinglab / CCMgen
  ☆20Updated 3 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• wangleiofficial / DSSPparser
  DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…
  ☆13Updated 2 years ago
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆62Updated last year
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆38Updated 5 years ago
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆79Updated 3 months ago
• insilichem / pychimera
  Use UCSF Chimera Python API in a standard interpreter
  ☆58Updated 6 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆30Updated last year
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆56Updated 2 months ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆103Updated 4 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• rcsb / mmtf-java
  The java implementation of the MMTF API, decoder and encoder.
  ☆11Updated last week
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆23Updated 2 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆54Updated 2 years ago
• normandavey / ProcessedAlphafold
  ☆31Updated 3 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆58Updated 3 weeks ago
• rcsb / rcsb-saguaro
  1D Feature Viewer
  ☆49Updated 3 weeks ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• mobiusklein / glypy
  Glycan Analysis and Glycoinformatics Library for Python
  ☆35Updated 2 weeks ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆135Updated 11 months ago