Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
☆21Feb 1, 2019Updated 7 years ago
Alternatives and similar repositories for mmtf-spark
Users that are interested in mmtf-spark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Bioinformatics Training Workshop & Hackathon 2017☆19Jan 23, 2018Updated 8 years ago
- Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.☆68Mar 27, 2023Updated 3 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2018☆60May 17, 2022Updated 4 years ago
- The specification of the MMTF format for biological structures☆45Jan 19, 2024Updated 2 years ago
- The javascript implementation of the MMTF format.☆11Jun 26, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago
- Machine learning experiments for CheckMyBlob☆14Jun 14, 2018Updated 8 years ago
- The python implementation of the MMTF API, decoder and encoder.☆45Jul 7, 2022Updated 4 years ago
- Macromolecular viewer for crystallographers (WebGL)☆43Apr 5, 2026Updated 4 months ago
- Benchmarking common tasks on proteins in various languages and packages☆42Dec 27, 2020Updated 5 years ago
- View proteins and trajectories in the terminal☆119Aug 8, 2020Updated 6 years ago
- Methods for mapping proteomics data on 3D protein structure.☆15Jan 18, 2020Updated 6 years ago
- Notes and experiments in Jupyter dashboarding☆16Apr 17, 2021Updated 5 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Recommendation-Powered Visualization Tool for Data Exploration☆14Aug 10, 2017Updated 9 years ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 8 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- SDSC Summer Institute 2022 material☆15Aug 8, 2023Updated 3 years ago
- ☆16Nov 6, 2024Updated last year
- Yet another tutorial on neural networks☆16Feb 11, 2019Updated 7 years ago
- JupyterLab extension for py3Dmol☆23Jan 2, 2022Updated 4 years ago
- Another CLI for Alps☆23Updated this week
- Functions to scrape GPCR data from the web.☆19Nov 18, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- JIP Pipeline System☆19Feb 5, 2018Updated 8 years ago
- The pure C++ implementation of the MMTF API, decoder and encoder.☆22Nov 14, 2023Updated 2 years ago
- PSIPRED Protein Secondary Structure Predictor☆60Jul 3, 2025Updated last year
- Takes query parameters from a url to create the first cell of a jupyter notebook.☆17Nov 13, 2024Updated last year
- SMTP server for asyncio☆14Sep 29, 2015Updated 10 years ago
- Use UCSF Chimera Python API in a standard interpreter☆59Mar 28, 2019Updated 7 years ago
- Guess sentences from initial letters of each word☆24Aug 22, 2022Updated 3 years ago
- WebGL protein viewer☆730Apr 14, 2025Updated last year
- Attempt at reproduction of AlphaFold2☆99Jul 30, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A fly.io example for Clojure☆29May 31, 2022Updated 4 years ago
- Open source code for AlphaFold.☆21Jul 2, 2023Updated 3 years ago
- Project for integration of OPS and the Knime workflow engine☆14Aug 12, 2015Updated 11 years ago
- ☆10Aug 9, 2026Updated last week
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated 2 years ago
- Contact Prediction ToolKit☆22Jul 23, 2026Updated 3 weeks ago
- Tandem Repeat Annotation Library☆25Mar 30, 2023Updated 3 years ago