sbl-sdsc / mmtf-pysparkLinks
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
☆68Updated 2 years ago
Alternatives and similar repositories for mmtf-pyspark
Users that are interested in mmtf-pyspark are comparing it to the libraries listed below
Sorting:
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- Structural Bioinformatics Training Workshop & Hackathon 2018☆60Updated 3 years ago
- Methods for mapping proteomics data on 3D protein structure.☆15Updated 5 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2017☆19Updated 7 years ago
- A collection of useful tutorials for Protein Science☆108Updated 10 years ago
- Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G pr…☆42Updated 2 weeks ago
- analyse PDB files, run molecular-dynamics & analyse trajectories☆61Updated 7 years ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 3 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Visually explore covariation in protein families☆38Updated 5 years ago
- ☆30Updated 2 months ago
- Interactive Python notebooks for PDBe API training☆55Updated last month
- Open Source Protein REdesign for You v3☆52Updated last month
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Control PyMOL sessions via IPython☆61Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- A Python platform for Structural Bioinformatics☆57Updated 4 months ago
- ☆20Updated 4 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 11 months ago
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆32Updated last year
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 6 years ago
- Pymol ScrIpt COllection (PSICO)☆60Updated last month
- PSIPRED Protein Secondary Structure Predictor☆57Updated last month
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆56Updated 9 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- Dynamics PyMOL Plugin☆44Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆24Updated 5 years ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago