Structural Bioinformatics Training Workshop & Hackathon 2017
☆19Jan 23, 2018Updated 8 years ago
Alternatives and similar repositories for mmtf-workshop-2017
Users that are interested in mmtf-workshop-2017 are comparing it to the libraries listed below
Sorting:
- Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.☆21Feb 1, 2019Updated 7 years ago
- Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.☆68Mar 27, 2023Updated 2 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2018☆60May 17, 2022Updated 3 years ago
- The specification of the MMTF format for biological structures☆44Jan 19, 2024Updated 2 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 3 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Project for integration of OPS and the Knime workflow engine☆14Aug 12, 2015Updated 10 years ago
- Methods for mapping proteomics data on 3D protein structure.☆15Jan 18, 2020Updated 6 years ago
- PyMOL Plugin for displaying polar contacts☆18Mar 11, 2019Updated 6 years ago
- Contact Prediction ToolKit☆22Feb 11, 2026Updated 3 weeks ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Aug 10, 2025Updated 6 months ago
- Detect, analyze, and visualize protein symmetry☆30Dec 19, 2025Updated 2 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Aug 9, 2024Updated last year
- The Swiss Army knife for carbohydrate structure validation, refinement and analysis☆29Updated this week
- An open-source library for the analysis of protein interactions.☆33Dec 5, 2021Updated 4 years ago
- 2D/3D generation for small compounds☆33Feb 2, 2020Updated 6 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28May 17, 2022Updated 3 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆71Dec 10, 2023Updated 2 years ago
- Developing a Deep learning classification-based model for screening pharmaceutical compounds with hERG inhibitory activity (cardiotoxicit…☆14Oct 2, 2024Updated last year
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- gmx_corr converts the covariance matrix which is produced by GROMACS covar to cross correlation matrix and creates a heat map figure.☆11Oct 11, 2022Updated 3 years ago
- AI for a cure, a combination of Latent-GAN and VAE-JTNN to create 100% valid drug like molecules☆10Mar 16, 2020Updated 5 years ago
- NSU bioinformatics Python course☆13Sep 24, 2024Updated last year
- Macromolecular viewer for crystallographers (WebGL)☆40Aug 8, 2025Updated 6 months ago
- 2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js☆85Mar 30, 2018Updated 7 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM.☆12Feb 20, 2026Updated last week
- Python implementation of various 2D and 3D compactness measures.☆10Aug 17, 2022Updated 3 years ago
- Benchmarking common tasks on proteins in various languages and packages☆42Dec 27, 2020Updated 5 years ago
- An algorithm that carries out both large-loop and small-loop TEM modeling.☆11Jan 4, 2022Updated 4 years ago
- The Chemical Reaction Optimization (CRO) algorithm with dependent classes in python 3.☆11Apr 21, 2020Updated 5 years ago
- A program for the conformational search in flexible acyclic molecules☆11Jul 12, 2022Updated 3 years ago
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- Drug-Target Interaction Prediction Using Convolutional Neural Networks By Images of Compounds☆10Jun 16, 2020Updated 5 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- ☆10Apr 22, 2019Updated 6 years ago
- Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.☆11Jul 15, 2024Updated last year