Use UCSF Chimera Python API in a standard interpreter
☆59Mar 28, 2019Updated 7 years ago
Alternatives and similar repositories for pychimera
Users that are interested in pychimera are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆41Apr 7, 2022Updated 4 years ago
- GaudiMM: A modular optimization platform for molecular design☆32May 10, 2024Updated 2 years ago
- Various tutorials about MD setup and analysis, protein-ligand docking, machine learning and lots of other interesting things.☆35Jan 2, 2021Updated 5 years ago
- Plugin to UCSF Chimera for segmenting Cryo-EM density maps☆12Dec 18, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Utilities for working with the RDKit☆20Sep 5, 2016Updated 10 years ago
- MD pharmacophores and virtual screening☆35Dec 15, 2023Updated 2 years ago
- Tautomer ratios in solution☆28Sep 20, 2021Updated 5 years ago
- HTMD: Programming Environment for Molecular Discovery☆277Oct 6, 2026Updated last week
- Challenge inputs, details, and results for the SAMPL6 series of challenges☆55Mar 29, 2022Updated 4 years ago
- Python Tools for NAMD☆25May 7, 2025Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆47Apr 22, 2023Updated 3 years ago
- A tool that helps finding decoy molecules for a given target, provided a set of active molecules.☆19Feb 24, 2022Updated 4 years ago
- Building and analyzing residue interaction networks with cofactors (includes tutorial).☆19Mar 31, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆13Jun 9, 2026Updated 4 months ago
- Containerised components for cheminformatics and computational chemistry☆36May 23, 2023Updated 3 years ago
- Real time monitoring and visualization of Amber MD simulations☆16Feb 6, 2020Updated 6 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆87Jul 10, 2026Updated 3 months ago
- Utilities for interacting with PubChem☆18Feb 11, 2015Updated 11 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆20Sep 2, 2022Updated 4 years ago
- PCA and normal mode analysis of proteins☆21May 16, 2024Updated 2 years ago
- ☆10Feb 18, 2020Updated 6 years ago
- RF-Score-VS - Random forest based protein-ligand scoring function for Virtual Screening☆49Dec 30, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- APBS - software for biomolecular electrostatics and solvation☆133Jul 27, 2020Updated 6 years ago
- A Python package to calculate, visualize and analyze correlation maps of proteins.☆44Jul 24, 2026Updated 2 months ago
- A python interface for the GROMACS molecular simulation package.☆24Jun 4, 2012Updated 14 years ago
- 3D ligand-based pharmacophore modeling☆57Apr 18, 2026Updated 5 months ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- DENOPTIM is a software package for de novo design and virtual screening of functional molecules of any kind.☆40Updated this week
- ☆151Nov 18, 2018Updated 7 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20May 22, 2019Updated 7 years ago
- MMTSB Tool Set☆33Jan 26, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python API for the RCSB Protein Data Bank (PDB)☆339Aug 1, 2026Updated 2 months ago
- Centroid RNA package☆20Oct 12, 2020Updated 6 years ago
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆31Dec 30, 2022Updated 3 years ago
- Statistical Analysis of Docking Results and Scoring functions☆21Sep 17, 2026Updated 3 weeks ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Sep 20, 2022Updated 4 years ago
- Jupyter widget to interactively view molecular structures and trajectories☆927Feb 2, 2026Updated 8 months ago
- metallocage construction and binding affinity calculations☆18May 30, 2023Updated 3 years ago