common-workflow-library / cwl-patternsLinks
Patterns commonly encountered when writing CWL workflows
☆26Updated 3 years ago
Alternatives and similar repositories for cwl-patterns
Users that are interested in cwl-patterns are comparing it to the libraries listed below
Sorting:
- A language server for Common Workflow Language☆65Updated last year
- Python utilities for CWL☆39Updated last week
- A web application to view and share Common Workflow Language workflows☆46Updated last week
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated last week
- A translator from WDL to CWL v1.2☆27Updated last week
- Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.☆24Updated last year
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- KnetMiner - webapp to search and visualize genome-scale knowledge graphs☆28Updated 3 weeks ago
- Job Manager API and UI for interacting with asynchronous batch jobs and workflows.☆26Updated last month
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆10Updated last month
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 7 months ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆38Updated last year
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- biotoolsregistry : discovery portal for bioinformatics☆77Updated 2 weeks ago
- ☆10Updated 7 months ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 8 months ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆20Updated 2 years ago
- Workflow Execution Service Backend☆18Updated this week
- Released CWL v1.2.1 specification☆37Updated 2 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- Repository with information about the BioHackathon hosted in Paris in Nov 2018☆28Updated 3 years ago
- WDL plugin for pytest☆48Updated last year
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 4 months ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Simon's Data Club - Reference data for Galaxy servers☆10Updated last year
- CWL experimental grammar☆11Updated 2 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 2 months ago
- This repo is for the metadata schemas associated with the HCA☆67Updated 3 weeks ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆15Updated 2 years ago