marshuang80 / cell-segmentation

Related projects: ⓘ

• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆110Updated 7 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆122Updated this week
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆27Updated last month
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆19Updated 4 years ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆26Updated last year
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆50Updated 6 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆30Updated last year
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆17Updated last year
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆16Updated 4 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆20Updated 4 years ago
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆86Updated last year
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆52Updated 4 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆72Updated this week
• sartorius-research / LIVECell
  ☆176Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆73Updated 7 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆58Updated 4 years ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆49Updated 3 months ago
• carpenterlab / 2019_Caicedo_CytometryA
  Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
  ☆13Updated 5 years ago
• Connor323 / Cancer-Cell-Tracking
  This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…
  ☆36Updated 5 years ago
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• overlapping-instances / MultiStar
  ☆10Updated 3 years ago
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆120Updated 2 months ago
• marrlab / InstantDL
  InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification
  ☆40Updated last year
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆90Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated 3 months ago
• AllenCell / aics-ml-segmentation
  ☆29Updated 2 years ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆40Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆50Updated 3 weeks ago