marshuang80 / cell-segmentationLinks
PyTorch implementation of several neural network models for cellular image segmentation
☆48Updated 6 years ago
Alternatives and similar repositories for cell-segmentation
Users that are interested in cell-segmentation are comparing it to the libraries listed below
Sorting:
- ☆197Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆118Updated last year
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆143Updated 4 months ago
- Three dimensional cross-modal image inference☆158Updated 4 years ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- U-net based segmentation of nuclei in microscopy images☆52Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆197Updated 4 years ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- Open source Python library for building bioimage analysis pipelines☆177Updated 2 weeks ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆153Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆88Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆100Updated last week
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆39Updated 6 years ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 3 years ago
- ☆85Updated 5 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆103Updated this week
- official implementation of the PatchPerPix instance segmentation method☆34Updated 2 years ago
- StarDist PyTorch☆47Updated 2 years ago
- InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification☆44Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 7 months ago
- [Pytorch] This project aims to perform well at instance segmentation on the BBBC006 cells dataset. We tested UNet over several configurat…☆43Updated 6 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆38Updated 2 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 4 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆37Updated 4 years ago