Alternatives and similar repositories for stardist_pytorch

Users that are interested in stardist_pytorch are comparing it to the libraries listed below

• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• TissueImageAnalytics / CoNIC
  CoNIC Challenge
  ☆66Updated last year
• ruchikaverma-iitg / MoNuSAC
  This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their mo…
  ☆64Updated 3 years ago
• msahasrabudhe / miccai2020_self_sup_nuclei_seg
  Self-supervised nuclei segmentation (MICCAI 2020)
  ☆43Updated 4 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆93Updated 8 months ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆63Updated 2 years ago
• PathologyDataScience / BCSS
  Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…
  ☆161Updated 3 years ago
• DIAGNijmegen / pathology-hooknet
  ☆62Updated 10 months ago
• masih4 / CryoNuSeg
  This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…
  ☆40Updated 2 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆55Updated 2 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆54Updated 3 years ago
• cvlab-stonybrook / SAMPath
  Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)
  ☆42Updated 10 months ago
• hasibzunair / MoNuSAC-ISBI-2020
  [TMI'2021][ISBI MoNuSAC'2020] 11th place solution to Multi-organ nuclei segmentation and classification challenge.
  ☆31Updated 4 years ago
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆139Updated 4 years ago
• YashSharma / C2C
  Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
  ☆61Updated 3 years ago
• TissueImageAnalytics / PanNuke-metrics
  Evaluation code for the PanNuke dataset
  ☆28Updated 4 years ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆92Updated last week
• Mr-TalhaIlyas / TSFD
  Nuclei segmentation and classification (Cancer cells)
  ☆26Updated last year
• ChuHan89 / WSSS-Tissue
  ☆64Updated 3 years ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆72Updated 6 months ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• huiqu18 / WeaklySegPointAnno
  ☆34Updated 6 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆33Updated 4 years ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆68Updated last year
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• SHIDCenter / PathoNet
  ☆35Updated 2 years ago
• vqdang / H2T
  ☆35Updated 2 years ago
• rshwndsz / hover-net
  PyTorch implementation of HoverNet as described in https://arxiv.org/abs/1812.06499
  ☆23Updated 5 years ago
• pegahsalehi / Stain-to-Stain-Translation
  Pix2Pix-based Stain-to-Stain Translation: A Solution for Robust Stain Normalization in Histopathology Images Analysis
  ☆33Updated 5 years ago
• sophiajw / HistAuGAN
  ☆44Updated 3 years ago