StarDist PyTorch
☆47Nov 13, 2022Updated 3 years ago
Alternatives and similar repositories for stardist_pytorch
Users that are interested in stardist_pytorch are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆27Feb 10, 2023Updated 3 years ago
- ☆10Nov 5, 2020Updated 5 years ago
- This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…☆45Feb 8, 2023Updated 3 years ago
- ☆13Jun 11, 2023Updated 2 years ago
- The code of Triple U-net: Hematoxylin-aware Nuclei Segmentation with Progressive Dense Feature Aggregation.☆20Mar 17, 2022Updated 3 years ago
- StarDist - Object Detection with Star-convex Shapes☆1,179Feb 14, 2026Updated 3 weeks ago
- PointNu-Net Project☆18Dec 28, 2023Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- ☆12Mar 1, 2026Updated last week
- ☆24Aug 27, 2020Updated 5 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆72Nov 21, 2022Updated 3 years ago
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated last year
- NuHTC: A Hybrid Task Cascade for Nuclei Instance Segmentation and Classification☆19Dec 18, 2025Updated 2 months ago
- Nuclei segmentation and classification (Cancer cells)☆25Jun 4, 2024Updated last year
- H&E histopathological staining normalization☆111Jan 24, 2020Updated 6 years ago
- Dense Steerable Filter CNN☆77Nov 21, 2022Updated 3 years ago
- [ECCV 2024] Code for "Unleashing the Power of Prompt-driven Nucleus Instance Segmentation"☆58Jan 9, 2025Updated last year
- ☆10Aug 22, 2020Updated 5 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆240Feb 4, 2026Updated last month
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆690Oct 27, 2023Updated 2 years ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- ☆13Jul 5, 2019Updated 6 years ago
- A collection of tools for the analysis of biological data☆12Mar 22, 2016Updated 9 years ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆117Feb 26, 2026Updated last week
- Train torchvision's MaskRCNN model using the ConvNeXt architecture as the backbone network.☆16Nov 3, 2022Updated 3 years ago
- [In Progressing]HaN5K: A project to develop foundation models for structure delineation in head and neck radiotherapy based on more than …☆16Dec 25, 2023Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆149Apr 22, 2025Updated 10 months ago
- This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their mo…☆67Dec 2, 2021Updated 4 years ago
- This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)☆70Mar 12, 2016Updated 9 years ago
- Re-Identification Across Indoor-Outdoor Dataset (RAiD) - Introduced in the work "Consistent Re-identification in a Camera Network" (ECCV …☆16Nov 26, 2014Updated 11 years ago
- CoNIC Challenge☆69Feb 19, 2024Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆466Updated this week
- This is official github repo for InReview paper "MaskAttn-UNet: A Mask Attention-Driven Framework for Universal Low-Resolution Image Seg…☆25May 6, 2025Updated 10 months ago
- ☆13Aug 30, 2024Updated last year
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Oct 3, 2019Updated 6 years ago
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago