Alternatives and similar repositories for deepflash2:

Users that are interested in deepflash2 are comparing it to the libraries listed below

• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆112Updated last year
• ZFTurbo / efficientnet_3D
  EfficientNets in 3D variant for keras and TF.keras
  ☆53Updated 3 years ago
• CBICA / HistoReg
  Framework for registration of sequential digitized histology slices
  ☆28Updated 2 years ago
• SBU-BMI / champkit
  Benchmarking toolkit for patch-based histopathology image classification.
  ☆39Updated last year
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆151Updated 10 months ago
• DIAGNijmegen / pathology-streaming-pipeline
  Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
  ☆77Updated 2 years ago
• Borda / kaggle_vol-3D-classify
  Predict the status of a genetic biomarker important for brain cancer treatment
  ☆38Updated last month
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆21Updated 4 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆136Updated this week
• ashawkey / volumentations
  3D volume data augmentation package inspired by albumentations
  ☆79Updated 5 years ago
• kakumarabhishek / MCC-Loss
  Matthews Correlation Coefficient Loss implementation for image segmentation.
  ☆12Updated 4 years ago
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆20Updated 4 years ago
• nauyan / NucleiSegmentation
  The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.
  ☆30Updated 2 years ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆61Updated 2 years ago
• sartorius-research / LIVECell
  ☆185Updated last year
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆20Updated last year
• ChristophReich1996 / Cell-DETR
  Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" …
  ☆99Updated 2 years ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆50Updated 8 months ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆83Updated last week
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆44Updated 2 years ago
• EIDOSLAB / UNITOPATHO
  Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.…
  ☆33Updated last year
• tsangel / dicomsdl
  DICOM Software Development Library
  ☆29Updated last month
• ZFTurbo / timm_3d
  PyTorch Volume Models for 3D data
  ☆51Updated 6 months ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• kreshuklab / spoco
  PyTorch implementation of SPOCO
  ☆32Updated 6 months ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• Optimox / HubMap
  Kaggle HubMap
  ☆37Updated 3 years ago
• CellProfiling / HPA-Cell-Segmentation
  ☆95Updated last year
• SarderLab / tf-WSI-dataset-utils
  An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow
  ☆15Updated 3 years ago