matjesg / deepflash2Links
A deep-learning pipeline for segmentation of ambiguous microscopic images.
☆63Updated 7 months ago
Alternatives and similar repositories for deepflash2
Users that are interested in deepflash2 are comparing it to the libraries listed below
Sorting:
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- ☆204Updated 2 years ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆156Updated last year
- Benchmarking toolkit for patch-based histopathology image classification.☆43Updated 2 years ago
- ☆95Updated last year
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆145Updated 8 months ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆39Updated 5 years ago
- Dense Steerable Filter CNN☆77Updated 3 years ago
- Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" …☆107Updated 3 years ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 3 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Updated 5 months ago
- 1st place solution for the Kaggle PANDA Challenge☆120Updated last year
- PyTorch implementation of SPOCO☆32Updated last year
- ☆24Updated 5 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 2 years ago
- ☆43Updated 3 years ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆41Updated 2 weeks ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Updated 4 years ago
- This is a PyTorch implementation of the paper: "Processing Megapixel Images with Deep Attention-Sampling Models".☆41Updated 2 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Updated 4 years ago
- StarDist PyTorch☆47Updated 3 years ago
- Python package for deep learning based image to image transformation☆53Updated last month
- Winners of the TissueNet: Detect Lesions in Cervical Biopsies competition☆21Updated 2 years ago
- 2nd place solution for the RSNA STR Pulmonary Embolism Detection competition on Kaggle.☆29Updated 5 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago