A deep-learning pipeline for segmentation of ambiguous microscopic images.
☆65May 6, 2025Updated last year
Alternatives and similar repositories for deepflash2
Users that are interested in deepflash2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimal fastai code needed for working with pytorch☆15Aug 25, 2021Updated 4 years ago
- HDF5 plugin for ImageJ and Fiji.☆12Nov 5, 2024Updated last year
- Benchmarking Yolov2, Faster-RCNN and Shape-Priors-CNN on dendritic spines detection☆11Nov 3, 2019Updated 6 years ago
- Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC …☆11Dec 17, 2020Updated 5 years ago
- A Python package to allow fastai to run on TPUs using Pytorch-XLA☆36Apr 12, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- Simple App to visualize single cell datasets☆22Apr 12, 2018Updated 8 years ago
- Code for COVID19 CT labeling. Submillimetric CT dataset provided as well.☆13Feb 16, 2021Updated 5 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆20Jul 16, 2026Updated last week
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆200Updated this week
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 7 months ago
- Example of using the SAINT architecture in fastai☆12Aug 25, 2021Updated 4 years ago
- A napari plugin to process and analyse images with chatGPT!☆297Feb 14, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Build fast gradio demos of fastai learners☆35Sep 23, 2021Updated 4 years ago
- ☆11Dec 12, 2019Updated 6 years ago
- ☆62Feb 14, 2025Updated last year
- A grid sampler for larger-than-memory N-dimensional images☆28Nov 11, 2025Updated 8 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 11 months ago
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 4 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The 2025 version of cellPLATO☆16Jan 23, 2026Updated 6 months ago
- Convert Intan (rhd or rhs) files to NWB file format☆10Oct 2, 2023Updated 2 years ago
- A production quality data pipeline for DICOM images segmentation.☆12Feb 4, 2018Updated 8 years ago
- Fastai + PyTorch DDP in Jupyter Notebook☆27Sep 29, 2020Updated 5 years ago
- Code for StructN2V method and experiments☆23Jan 22, 2022Updated 4 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 2 months ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 3 years ago
- Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data☆11Sep 3, 2025Updated 10 months ago
- A miniture AI training framework for PyTorch☆43Feb 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IceData: Datasets Hub for the *IceVision* Framework☆50Mar 15, 2022Updated 4 years ago
- ☆10Jun 14, 2022Updated 4 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆57Jan 22, 2025Updated last year
- Time Flies: Animating a Still Image with Time-Lapse Video as Reference, CVPR2020☆20Jun 17, 2020Updated 6 years ago
- ☆10Feb 5, 2026Updated 5 months ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 8 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12May 28, 2026Updated last month