Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
☆41Sep 4, 2026Updated last month
Alternatives and similar repositories for voronota
Users that are interested in voronota are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆28Aug 12, 2021Updated 5 years ago
- Fast, accurate, and deterministic protein side-chain packing☆40Feb 28, 2025Updated last year
- Mirror of https://codeberg.org/rvhonorato/gdock >> development happens on Codeberg☆20Jul 7, 2026Updated 3 months ago
- ☆11Apr 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrative modeling of PROTAC-mediated ternary complex☆37May 4, 2022Updated 4 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆24Mar 26, 2020Updated 6 years ago
- A Java library for handling text and BinaryCIF files.☆14Jan 13, 2026Updated 9 months ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Oct 7, 2026Updated last week
- ☆16Jan 10, 2023Updated 3 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆35Jun 3, 2022Updated 4 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆20Apr 12, 2019Updated 7 years ago
- Library for prediction of cryptic binding sites☆27Aug 6, 2025Updated last year
- ☆13Jul 11, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A simple Python library to generate model peptides☆105Nov 29, 2020Updated 5 years ago
- Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest☆14Mar 22, 2023Updated 3 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆411Sep 6, 2026Updated last month
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Mar 17, 2023Updated 3 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆21Jul 11, 2024Updated 2 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated 6 months ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated 8 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- C-library for calculating Solvent Accessible Surface Areas☆208May 31, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Interactive Python notebooks for PDBe API training☆62Jun 22, 2026Updated 3 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆283Feb 14, 2024Updated 2 years ago
- Tools for assessing convergence of Molecular Dynamics simulations by error analysis of calculated ensemble averages and free energies☆15Jan 4, 2024Updated 2 years ago
- Protein structure descriptors and alignment based on 3D Zernike moments.☆41Apr 10, 2026Updated 6 months ago
- A software research tool for the analysis of structural communication in protein ensembles☆15Mar 24, 2022Updated 4 years ago
- ☆67Mar 14, 2023Updated 3 years ago
- ☆17Sep 26, 2025Updated last year
- 2D portraits of 3D protein structures☆27May 14, 2026Updated 5 months ago
- mmCIF Core Access Library☆51Oct 11, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- protein docking stuff☆58Apr 2, 2026Updated 6 months ago
- ☆72Feb 13, 2026Updated 8 months ago
- A Python Package for Protein Dynamics Analysis☆560Oct 4, 2026Updated 2 weeks ago
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆22Sep 8, 2018Updated 8 years ago
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 8 months ago
- Biomolecular Illustration Tool☆126Aug 17, 2024Updated 2 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆16Sep 13, 2026Updated last month