Alternatives and similar repositories for Chado:

Users that are interested in Chado are comparing it to the libraries listed below

• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆53Updated this week
• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆40Updated last week
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆96Updated 2 months ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆85Updated this week
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆40Updated this week
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated last month
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• elixir-europe / biohackathon-projects-2024
  Project code for BioHackathon Europe 2024.
  ☆18Updated 3 months ago
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated this week
• bioinfo-pf-curie / geniac
  Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for th…
  ☆8Updated last month
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆61Updated this week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆58Updated last week
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆38Updated 2 years ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆62Updated last week
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆73Updated 3 weeks ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆25Updated 2 weeks ago
• dceoy / pdbio
  Pandas-based Data Handler for VCF, BED, and SAM Files
  ☆32Updated 3 years ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆29Updated 2 years ago
• openwdl / workflow-template-wdl
  ☆9Updated 3 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆40Updated last week
• enasequence / webin-cli
  Webin command line submission program.
  ☆32Updated last month
• sapporo-wes / sapporo-service
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆21Updated last month
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆51Updated 3 weeks ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆90Updated last week
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated this week
• ncbi / magicblast
  ☆35Updated last year
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆32Updated last week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• microbiomedata / nmdc-metadata
  Managing metadata and policy around metadata in NMDC
  ☆2Updated 9 months ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆64Updated this week