Alternatives and similar repositories for Chado:

Users that are interested in Chado are comparing it to the libraries listed below

• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆38Updated 2 years ago
• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆43Updated last week
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated this week
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆27Updated 2 months ago
• openwdl / workflow-template-wdl
  ☆9Updated 5 months ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated last week
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆18Updated last year
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆24Updated last year
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• chanzuckerberg / czid-workflows
  Portable WDL workflows for CZ ID production pipelines
  ☆43Updated last week
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆90Updated 3 weeks ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆30Updated 2 years ago
• lorrainea / MARS
  MARS: improving Multiple circular sequence Alignment using Refined Sequences
  ☆29Updated 5 months ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 4 months ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• ncbi / magicblast
  ☆36Updated 3 weeks ago
• GenomiqueENS / aozan
  An automated post sequencing data processing pipeline for Illumina HiSeq
  ☆14Updated last month
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 2 weeks ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆40Updated this week
• NCBI-Hackathons / NovoGraph
  NovoGraph: building whole genome graphs from long-read-based de novo assemblies
  ☆45Updated 4 years ago
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆86Updated 2 months ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated 2 weeks ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆30Updated 3 months ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆39Updated 4 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆55Updated this week
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆65Updated 2 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆107Updated 3 weeks ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• microbialphenotypes / OMP-ontology
  This repository contains the editors's working copy of OMP and public release files.
  ☆8Updated last year