Alternatives and similar repositories for Chado

Users that are interested in Chado are comparing it to the libraries listed below

• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated 3 weeks ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated 2 weeks ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆101Updated last month
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆23Updated this week
• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆55Updated this week
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆47Updated 2 months ago
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆29Updated 4 years ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆29Updated 4 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated last week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆70Updated 2 weeks ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆79Updated 4 months ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆132Updated last week
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆77Updated 2 weeks ago
• mvelinder / ped_draw
  Pedigree drawing with ease
  ☆24Updated 3 years ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆63Updated last week
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆29Updated 2 years ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆70Updated 3 months ago
• molgenis / vip
  Variant Interpretation Pipeline
  ☆44Updated this week
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆67Updated last week
• ASaiM / framework
  Open-source opinionated Galaxy-based framework for microbiota analysis
  ☆14Updated 4 years ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆15Updated 2 months ago
• brentp / vcf-bench
  evaluating vcf parsing libraries
  ☆19Updated 3 years ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated last month
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated 2 months ago