Alternatives and similar repositories for Chado

Users that are interested in Chado are comparing it to the libraries listed below

• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆43Updated 3 weeks ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆56Updated last week
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆38Updated 2 years ago
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated this week
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆33Updated this week
• ncbi / pipelines
  ☆14Updated 6 years ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆53Updated last month
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated last month
• openwdl / workflow-template-wdl
  ☆9Updated 6 months ago
• chanzuckerberg / czid-workflows
  Portable WDL workflows for CZ ID production pipelines
  ☆43Updated last month
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated last month
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆30Updated 2 years ago
• microbialphenotypes / OMP-ontology
  This repository contains the editors's working copy of OMP and public release files.
  ☆8Updated last year
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated last week
• microbiomedata / nmdc-metadata
  Managing metadata and policy around metadata in NMDC
  ☆2Updated last year
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆88Updated last week
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated last year
• nextflow-io / nf-prov
  ☆30Updated this week
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆63Updated 2 years ago
• ncbi / magicblast
  ☆36Updated 3 weeks ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆90Updated this week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆109Updated last month
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆50Updated 11 months ago
• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆21Updated last month
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆59Updated last year
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 5 years ago
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆18Updated 4 months ago