Simulation of Pleiotropic, Linked and Epistatic Phenotypes
☆16Jun 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for simplePHENOTYPES
Users that are interested in simplePHENOTYPES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lectures, documents and presentations☆15May 28, 2026Updated last month
- ☆15Jul 19, 2025Updated 11 months ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Added functions for Echidna in R☆11Apr 14, 2023Updated 3 years ago
- Simple colour thresholdhing for Gilgai detection☆12Mar 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Make Your Couch a Data Pre-Processing Cent…☆15Nov 1, 2023Updated 2 years ago
- Structural variant caller for low-depth long-read sequencing data☆30Jan 6, 2025Updated last year
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Upgrade to coloc☆13Aug 1, 2018Updated 7 years ago
- An End-to-End Benchmarking Framework for Retrieval-Augmented Generation Systems☆29Mar 13, 2026Updated 3 months ago
- ☆29Nov 22, 2020Updated 5 years ago
- 2024 BreedWheat Genomic Selection pipeline☆15Jan 3, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 10 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 4 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆40Mar 24, 2025Updated last year
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆13Mar 26, 2019Updated 7 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Workflow and script for converting genomic coordinates using MUMmer output and CrossMap☆12Jun 15, 2026Updated 2 weeks ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 2 months ago
- GWAS software that can handle autopolyploids☆33Oct 14, 2025Updated 8 months ago
- ☆10Feb 18, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Sep 11, 2020Updated 5 years ago
- ☆10Mar 24, 2025Updated last year
- Data logging application for photosynthetically active radiation (PAR) using an Arduino.☆11Sep 30, 2015Updated 10 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- genotype dimensionality reduction with a VAE☆50Mar 11, 2025Updated last year
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SS^3☆15Aug 19, 2021Updated 4 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Web version of GenomeRunner☆11Nov 6, 2016Updated 9 years ago
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated 2 years ago
- Explore the Hi-Cs☆12Nov 30, 2025Updated 7 months ago