Alternatives and similar repositories for simplePHENOTYPES:

Users that are interested in simplePHENOTYPES are comparing it to the libraries listed below

• MarcooLopez / Genomic-Selection
  ☆24Updated 4 years ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆16Updated 3 years ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 2 months ago
• hemstrow / snpR
  ☆29Updated last week
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆33Updated 10 months ago
• whussain2 / Analysis-pipeline
  ☆34Updated 3 years ago
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 4 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆62Updated 2 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆19Updated 7 months ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆34Updated 2 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆34Updated last year
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated 8 months ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆49Updated last year
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 2 months ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 4 months ago
• YuLab-SMU / plotting-tree-with-data-using-ggtreeExtra
  ☆24Updated 3 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated 4 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆56Updated 3 months ago
• prmunoz / AGHmatrix
  An R package to compute relationship matrices for diploid and autotetraploid species
  ☆18Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆50Updated 2 months ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆27Updated 11 months ago
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 3 years ago
• bcm-uga / lfmm
  Fitting latent factor mixed models
  ☆12Updated 4 years ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆36Updated 2 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• JaeYoonKim72 / GMStool
  ☆16Updated 4 years ago