Deep Electron Microscopy Image Stitching (DEMIS): a tool for stitching grids of electron microscopy images. Image matching is performed using LoFTR.
☆16Dec 29, 2025Updated 8 months ago
Alternatives and similar repositories for demis
Users that are interested in demis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 18, 2024Updated 2 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Aug 17, 2026Updated last week
- MIST-inspired microscope image stitching package☆82Jan 29, 2026Updated 7 months ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆16Apr 13, 2019Updated 7 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Feb 23, 2024Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆28Feb 24, 2026Updated 6 months ago
- ☆17Feb 16, 2023Updated 3 years ago
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago
- ☆14Jan 24, 2019Updated 7 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆40Jul 2, 2026Updated last month
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆15Apr 16, 2026Updated 4 months ago
- S/TEM Automated Nanoparticle Analysis☆36Apr 13, 2026Updated 4 months ago
- ☆10Feb 8, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts for building, training and validating CNNs for Connectomics☆12Mar 24, 2023Updated 3 years ago
- Framework for registration of sequential digitized histology slices☆30Mar 24, 2022Updated 4 years ago
- Automatic Correction for sCMOS-related Noise☆18Nov 18, 2021Updated 4 years ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 7 months ago
- Generates simulated confocal data from a ground truth signal☆11Aug 16, 2022Updated 4 years ago
- Aligner for large scale serial section image data☆19Jul 7, 2023Updated 3 years ago
- A 3D printed modification to the DLP4710EVM DMD to turn it into a lab-usable spatial light modulator.☆16Apr 5, 2021Updated 5 years ago
- ☆10Updated this week
- A Python script used to stitch a two-dimensional grid of tiles into a mosaic☆31Jul 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A napari plugin for zarr backed OME-NGFF images☆54Aug 18, 2026Updated last week
- Lab for quantitative bioimage analysis experiments in Python☆21Feb 16, 2026Updated 6 months ago
- Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.☆50Mar 30, 2026Updated 5 months ago
- Modular microscope control in LabView.☆14Jan 20, 2026Updated 7 months ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆20Jul 16, 2019Updated 7 years ago
- MATLAB based Simulation of probe formation and imaging in modern field emission SEMs based on electron wave optics☆14Mar 3, 2025Updated last year
- ☆13Jun 17, 2026Updated 2 months ago
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 10 months ago
- Interactive electron optical simulation of a TEM☆12Nov 24, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Control and Automation of Transmission Electron Microscopes☆15Aug 12, 2022Updated 4 years ago
- ☆12Feb 5, 2026Updated 6 months ago
- A program interfacing Segment Anything with cryoSPARC via cryosparc-tools to efficiently identify vesicle-embedded membrane proteins and …☆18Feb 18, 2025Updated last year
- Blender application template simulating degrees of freedom in a focused ion beam system☆10Sep 3, 2021Updated 4 years ago
- High quality visualization for volumetric image data☆62Updated this week
- Electronic control of microscope elements (camera/laser triggering, TTL, PWM, servos, analog i/o) based on affordable FPGAs, integrated w…☆24Feb 27, 2023Updated 3 years ago
- ImageJ/Fiji plugin for consistent elastic registration of 2D images☆26Jun 14, 2022Updated 4 years ago