Alternatives and similar repositories for biophys_optimize

Users that are interested in biophys_optimize are comparing it to the libraries listed below

• INM-6 / viziphant
  Visualization of electrophysiological data from Elephant
  ☆24Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• anoushkajain / UnitRefine
  UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.
  ☆62Updated this week
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆99Updated last week
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆189Updated last year
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆131Updated 2 years ago
• orena1 / neuron_reduce
  ☆26Updated 5 years ago
• NeurodataWithoutBorders / matnwb
  A Matlab interface for reading and writing NWB files
  ☆56Updated this week
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆46Updated 6 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆138Updated 5 months ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆65Updated this week
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 2 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 7 months ago
• buzsakilab / 3d_print_designs
  ☆18Updated last year
• pillowlab / GLMspiketraintutorial
  Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
  ☆97Updated 3 years ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆31Updated 2 months ago
• churchlandlab / ChronicNeuropixels
  Neuropixels case for chronic recordings in freely moving mice.
  ☆19Updated 6 years ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆71Updated 5 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated this week
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆122Updated last year
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆226Updated last week
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆130Updated 2 years ago
• AllenInstitute / brain_observatory_examples
  Gallery of visualizations and analyses of the Allen Brain Observatory
  ☆25Updated 3 years ago
• SpikeInterface / probeinterface
  Python package to handle probe layout, geometry and wiring to device.
  ☆75Updated 2 weeks ago
• Eden-Kramer-Lab / ripple_detection
  Tools for identifying sharp wave ripple events using LFPs
  ☆40Updated last month
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 2 weeks ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 4 months ago