Optimization of single-cell biophysically detailed models
☆16Jul 17, 2020Updated 6 years ago
Alternatives and similar repositories for biophys_optimize
Users that are interested in biophys_optimize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python toolkits and GUI for multi-patch whole-cell data analysis and visualization☆24Sep 21, 2025Updated 11 months ago
- Simple single neuron simulations in Julia☆10May 31, 2019Updated 7 years ago
- A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment☆30Mar 30, 2026Updated 5 months ago
- An interactive image processing program for biologists written in Python.☆26Mar 4, 2026Updated 5 months ago
- Neural Signal Analysis☆14Jan 5, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆17Mar 2, 2026Updated 5 months ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 4 months ago
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead☆73Jul 3, 2020Updated 6 years ago
- (version 2018) Toolbox for estimation and interpretation of whole-brain linear effective connectivity☆10Nov 8, 2019Updated 6 years ago
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- A package for data-driven validation of neuron and ion channel models using SciUnit☆42Jul 18, 2021Updated 5 years ago
- Cognitive Computational Neuroscience online Reading Club（CCN0RC）☆12Jul 30, 2021Updated 5 years ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆11Dec 5, 2019Updated 6 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆26May 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A lightweight graph class library relevant for causal inference.☆13Mar 8, 2023Updated 3 years ago
- A nascent Jax-based package for virtual brain modeling.☆14May 5, 2026Updated 3 months ago
- Programs for Information Topology Data Analysis☆13Oct 11, 2020Updated 5 years ago
- CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).☆14Aug 12, 2022Updated 4 years ago
- Labelmaker using SVG templates and CSV data☆10Aug 13, 2023Updated 3 years ago
- ☆12Nov 17, 2018Updated 7 years ago
- This package contains MatLab code for analyzing and synthesizing digital image of visual texture.☆37Aug 12, 2025Updated last year
- Simple syntax highlighting for spice☆11Mar 23, 2019Updated 7 years ago
- Django/Angular/React software for graphing neural activity data (analog signals, spike trains etc.) read from Neo files.☆12Aug 18, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Render transformed image tiles☆37Updated this week
- A place where all demo code and data are stored.☆14Nov 25, 2020Updated 5 years ago
- Needed for NEURON GUI☆12Updated this week
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Emergent property inference.☆11Jul 6, 2023Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- A Multi-GPU version for CoreNeuron☆11Oct 13, 2017Updated 8 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- train a spiking recurrent neural network☆16Aug 29, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Slides and demos from JuliaCon 2017 on 'Event-based Simulation of Spiking Neural Networks in Julia'☆16Jun 28, 2017Updated 9 years ago
- python code for data processing☆18May 15, 2013Updated 13 years ago
- SpikeForest -- spike sorting analysis for website☆16Jul 7, 2020Updated 6 years ago
- SanPy is software for whole-cell current clamp analysis.☆14Jul 14, 2026Updated last month
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10May 13, 2022Updated 4 years ago
- ☆13Jun 15, 2024Updated 2 years ago
- spikebench is an open spike train time-series classification benchmark☆13Oct 3, 2022Updated 3 years ago