Optimization of single-cell biophysically detailed models
☆16Jul 17, 2020Updated 6 years ago
Alternatives and similar repositories for biophys_optimize
Users that are interested in biophys_optimize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python toolkits and GUI for multi-patch whole-cell data analysis and visualization☆24Sep 21, 2025Updated 11 months ago
- Simple single neuron simulations in Julia☆10May 31, 2019Updated 7 years ago
- A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment☆30Mar 30, 2026Updated 5 months ago
- An interactive image processing program for biologists written in Python.☆26Mar 4, 2026Updated 6 months ago
- Neural Signal Analysis☆14Jan 5, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆18Mar 2, 2026Updated 6 months ago
- [UNMAINTAINED] XPPy is Python interface for Bard Ermentrout's XPP.☆31Aug 29, 2022Updated 4 years ago
- Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from n…☆11Jul 28, 2020Updated 6 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 5 months ago
- (version 2018) Toolbox for estimation and interpretation of whole-brain linear effective connectivity☆10Nov 8, 2019Updated 6 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆31Aug 14, 2026Updated last month
- An implementation of Frank Karsten's deck aggregation algorithm described here: http://www.channelfireball.com/articles/magic-math-a-new-…☆12Mar 13, 2018Updated 8 years ago
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- A package for data-driven validation of neuron and ion channel models using SciUnit☆42Jul 18, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cognitive Computational Neuroscience online Reading Club(CCN0RC)☆12Jul 30, 2021Updated 5 years ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆11Dec 5, 2019Updated 6 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆27May 3, 2024Updated 2 years ago
- A lightweight graph class library relevant for causal inference.☆13Mar 8, 2023Updated 3 years ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆12Sep 23, 2024Updated last year
- A nascent Jax-based package for virtual brain modeling.☆15May 5, 2026Updated 4 months ago
- Programs for Information Topology Data Analysis☆13Oct 11, 2020Updated 5 years ago
- Labelmaker using SVG templates and CSV data☆10Aug 13, 2023Updated 3 years ago
- ☆12Nov 17, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This package contains MatLab code for analyzing and synthesizing digital image of visual texture.☆37Aug 12, 2025Updated last year
- Simple syntax highlighting for spice☆11Mar 23, 2019Updated 7 years ago
- Django/Angular/React software for graphing neural activity data (analog signals, spike trains etc.) read from Neo files.☆12Aug 18, 2026Updated last month
- Render transformed image tiles☆37Updated this week
- A place where all demo code and data are stored.☆14Nov 25, 2020Updated 5 years ago
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- Analysis code for multi-armed bandit task☆11May 14, 2020Updated 6 years ago
- Emergent property inference.☆11Jul 6, 2023Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Multi-GPU version for CoreNeuron☆11Oct 13, 2017Updated 8 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- train a spiking recurrent neural network☆16Aug 29, 2024Updated 2 years ago
- Slides and demos from JuliaCon 2017 on 'Event-based Simulation of Spiking Neural Networks in Julia'☆16Jun 28, 2017Updated 9 years ago
- python code for data processing☆18May 15, 2013Updated 13 years ago
- SpikeForest -- spike sorting analysis for website☆16Jul 7, 2020Updated 6 years ago
- SanPy is software for whole-cell current clamp analysis.☆14Updated this week