Optimization of single-cell biophysically detailed models
☆16Jul 17, 2020Updated 5 years ago
Alternatives and similar repositories for biophys_optimize
Users that are interested in biophys_optimize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment☆30Mar 30, 2026Updated 3 months ago
- python toolkits and GUI for multi-patch whole-cell data analysis and visualization☆24Sep 21, 2025Updated 9 months ago
- Simple single neuron simulations in Julia☆10May 31, 2019Updated 7 years ago
- An interactive image processing program for biologists written in Python.☆26Mar 4, 2026Updated 3 months ago
- [UNMAINTAINED] XPPy is Python interface for Bard Ermentrout's XPP.☆31Aug 29, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆17Mar 2, 2026Updated 3 months ago
- Neural Signal Analysis☆14Jan 5, 2026Updated 5 months ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 2 months ago
- (version 2018) Toolbox for estimation and interpretation of whole-brain linear effective connectivity☆10Nov 8, 2019Updated 6 years ago
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead☆73Jul 3, 2020Updated 5 years ago
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from n…☆11Jul 28, 2020Updated 5 years ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆11Dec 5, 2019Updated 6 years ago
- A nascent Jax-based package for virtual brain modeling.☆14May 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dimensionality-reduction and classification for morphology and electrophysiology☆12Sep 23, 2024Updated last year
- CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).☆14Aug 12, 2022Updated 3 years ago
- Labelmaker using SVG templates and CSV data☆10Aug 13, 2023Updated 2 years ago
- ☆12Nov 17, 2018Updated 7 years ago
- A lightweight graph class library relevant for causal inference.☆13Mar 8, 2023Updated 3 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 5 years ago
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- Analysis code for multi-armed bandit task☆11May 14, 2020Updated 6 years ago
- Needed for NEURON GUI☆12May 14, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Emergent property inference.☆11Jul 6, 2023Updated 2 years ago
- spikebench is an open spike train time-series classification benchmark☆13Oct 3, 2022Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Render transformed image tiles☆36Jun 23, 2026Updated last week
- Django/Angular/React software for graphing neural activity data (analog signals, spike trains etc.) read from Neo files.☆12Jun 15, 2026Updated 2 weeks ago
- Programs for Information Topology Data Analysis☆13Oct 11, 2020Updated 5 years ago
- A Multi-GPU version for CoreNeuron☆11Oct 13, 2017Updated 8 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- Slides and demos from JuliaCon 2017 on 'Event-based Simulation of Spiking Neural Networks in Julia'☆16Jun 28, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SanPy is software for whole-cell current clamp analysis.☆14Aug 6, 2025Updated 10 months ago
- Python Library to create, load, edit and save a Geppetto Model☆14May 22, 2023Updated 3 years ago
- train a spiking recurrent neural network☆16Aug 29, 2024Updated last year
- SpikeForest -- spike sorting analysis for website☆16Jul 7, 2020Updated 5 years ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10May 13, 2022Updated 4 years ago
- python code for data processing☆18May 15, 2013Updated 13 years ago
- Collaboration between BBP and AIBS☆65Nov 24, 2025Updated 7 months ago