Optimization of single-cell biophysically detailed models
☆16Jul 17, 2020Updated 6 years ago
Alternatives and similar repositories for biophys_optimize
Users that are interested in biophys_optimize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python toolkits and GUI for multi-patch whole-cell data analysis and visualization☆24Sep 21, 2025Updated 10 months ago
- An interactive image processing program for biologists written in Python.☆26Mar 4, 2026Updated 4 months ago
- Neural Signal Analysis☆14Jan 5, 2026Updated 6 months ago
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆17Mar 2, 2026Updated 4 months ago
- Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from n…☆11Jul 28, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 3 months ago
- (version 2018) Toolbox for estimation and interpretation of whole-brain linear effective connectivity☆10Nov 8, 2019Updated 6 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆31Dec 10, 2025Updated 7 months ago
- An implementation of Frank Karsten's deck aggregation algorithm described here: http://www.channelfireball.com/articles/magic-math-a-new-…☆12Mar 13, 2018Updated 8 years ago
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- A package for data-driven validation of neuron and ion channel models using SciUnit☆42Jul 18, 2021Updated 5 years ago
- Cognitive Computational Neuroscience online Reading Club(CCN0RC)☆12Jul 30, 2021Updated 4 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆25May 3, 2024Updated 2 years ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆11Dec 5, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A lightweight graph class library relevant for causal inference.☆13Mar 8, 2023Updated 3 years ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆12Sep 23, 2024Updated last year
- Programs for Information Topology Data Analysis☆13Oct 11, 2020Updated 5 years ago
- CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).☆14Aug 12, 2022Updated 3 years ago
- Labelmaker using SVG templates and CSV data☆10Aug 13, 2023Updated 2 years ago
- ☆12Nov 17, 2018Updated 7 years ago
- This package contains MatLab code for analyzing and synthesizing digital image of visual texture.☆37Aug 12, 2025Updated 11 months ago
- Django/Angular/React software for graphing neural activity data (analog signals, spike trains etc.) read from Neo files.☆12Jul 3, 2026Updated 2 weeks ago
- A place where all demo code and data are stored.☆14Nov 25, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Needed for NEURON GUI☆12May 14, 2026Updated 2 months ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- Analysis code for multi-armed bandit task☆11May 14, 2020Updated 6 years ago
- Emergent property inference.☆11Jul 6, 2023Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Official PyTorch implementation of OTiS: An open model for general time series analysis.☆18Apr 1, 2026Updated 3 months ago
- train a spiking recurrent neural network☆16Aug 29, 2024Updated last year
- Slides and demos from JuliaCon 2017 on 'Event-based Simulation of Spiking Neural Networks in Julia'☆16Jun 28, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SpikeForest -- spike sorting analysis for website☆16Jul 7, 2020Updated 6 years ago
- python code for data processing☆18May 15, 2013Updated 13 years ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10May 13, 2022Updated 4 years ago
- ☆13Jun 15, 2024Updated 2 years ago
- IBL AI Agent helps you use a coding agent such as OpenAI Codex to analyze International Brain Laboratory (IBL) data.☆41Updated this week
- Automatic ROI Detection☆19Nov 10, 2015Updated 10 years ago
- Collaboration between BBP and AIBS☆66Nov 24, 2025Updated 7 months ago