source code of the paper "RepLong - de novo repeat discovery from long reads"
☆17Jan 4, 2025Updated last year
Alternatives and similar repositories for replong
Users that are interested in replong are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 5 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- A tool for motif annotation and visualization in tandem repeats.☆14May 26, 2025Updated last year
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- ☆13Sep 20, 2024Updated last year
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 6 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆42Apr 22, 2026Updated 3 months ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated 2 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Python wrappers for programs that search for transposable elements☆19Jul 12, 2016Updated 10 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 7 months ago
- Pipelines for the production of Treeval data☆31Updated this week
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆21Apr 20, 2026Updated 3 months ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- tandem repeat finding from erroneous long reads☆15Jun 30, 2026Updated 3 weeks ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- ☆16Apr 2, 2024Updated 2 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆52Jun 25, 2024Updated 2 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 3 years ago
- ☆15Mar 6, 2018Updated 8 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- Feature Extraction Approaches for Biological Sequences: A Comparative Study of Mathematical Models☆16Jul 6, 2023Updated 3 years ago