source code of the paper "RepLong - de novo repeat discovery from long reads"
☆17Jan 4, 2025Updated last year
Alternatives and similar repositories for replong
Users that are interested in replong are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 5 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- ☆13Sep 20, 2024Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- A tool for motif annotation and visualization in tandem repeats.☆14May 26, 2025Updated last year
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 5 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆41Apr 22, 2026Updated last month
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Python wrappers for programs that search for transposable elements☆19Jul 12, 2016Updated 9 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 6 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆21Apr 20, 2026Updated last month
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- tandem repeat finding from erroneous long reads☆15Aug 4, 2025Updated 10 months ago
- Pipelines for the production of Treeval data☆31Updated this week
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- ☆15Apr 2, 2024Updated 2 years ago
- ☆16Mar 26, 2026Updated 2 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆52Jun 25, 2024Updated last year
- ☆19Mar 14, 2022Updated 4 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 3 years ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- ☆35Aug 18, 2024Updated last year