ruiguo-bio / replong
source code of the paper "RepLong - de novo repeat discovery from long reads"
☆16Updated 4 months ago
Alternatives and similar repositories for replong
Users that are interested in replong are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- ☆34Updated last year
- ☆30Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- SV calling for diploid assemblies☆27Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆30Updated 9 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- SV genotyping with long reads☆40Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Variant annotation and merging pipeline☆34Updated last month
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated 11 months ago
- ☆42Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆21Updated 3 months ago
- ☆14Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago