Python bindings for scalar and vectorial models of the 3D microscope point spread function.
☆54May 20, 2024Updated last year
Alternatives and similar repositories for PSFmodels
Users that are interested in PSFmodels are comparing it to the libraries listed below
Sorting:
- python functions for simulating optical transfer functions☆82Apr 8, 2024Updated last year
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Oct 28, 2025Updated 4 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- GPU accelerated beam propagation tools for biological light tissue simulations☆39Sep 29, 2018Updated 7 years ago
- Software for camera acquisition and tracking of particles☆11Nov 22, 2022Updated 3 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 5 years ago
- Light microscopy simulation in python.☆43Mar 10, 2026Updated last week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆89Mar 10, 2026Updated last week
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Mar 2, 2026Updated 2 weeks ago
- A hub to start the next generation of Microscope Control Software☆59Jan 7, 2021Updated 5 years ago
- Place to discuss the future design of a universal microscope hardware interface☆15May 18, 2021Updated 4 years ago
- Differentiable wave optics using JAX! Documentation can be found at https://chromatix.readthedocs.io☆153Nov 6, 2025Updated 4 months ago
- 1d plotting in napari-based canvas.☆25Mar 13, 2026Updated last week
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆89Aug 29, 2025Updated 6 months ago
- The Fluorescent Protein Database☆78Mar 9, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Oct 17, 2023Updated 2 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆84Mar 10, 2026Updated last week
- Various parts made for fluorescence microscopy + optics work☆16Jul 22, 2019Updated 6 years ago
- Code accompanying paper titled "Algorithmic Guarantees for Inverse Imaging with Untrained Network Priors"☆10Sep 8, 2019Updated 6 years ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 4 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆32Oct 2, 2024Updated last year
- ☆69Apr 23, 2021Updated 4 years ago
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Mar 2, 2019Updated 7 years ago
- Python control of micro-manager for customized data acquisition☆179Mar 13, 2026Updated last week
- GPU accelerated 3D image deconvolution using CUDA☆39Jul 18, 2024Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆46Mar 13, 2026Updated last week
- A Micro-Manager plugin that loads easily reconfigurable user interfaces.☆11Aug 30, 2023Updated 2 years ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Mar 2, 2026Updated 2 weeks ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago