An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…
☆49Mar 20, 2024Updated 2 years ago
Alternatives and similar repositories for clinical_informatics_umls
Users that are interested in clinical_informatics_umls are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- A small python package that allows the user to look up common medical abbreviations.☆12Apr 19, 2022Updated 3 years ago
- Python module to parse UMLS source files☆20Feb 27, 2023Updated 3 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆26Dec 25, 2021Updated 4 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- UMLS Terminology Server☆19Jan 27, 2026Updated 2 months ago
- UMLS Graph database for semantic queries☆27Jan 11, 2023Updated 3 years ago
- Build PharMeBINet from different sources.☆20Jan 15, 2026Updated 2 months ago
- Medical Concept Annotation Tool☆526Jul 25, 2025Updated 8 months ago
- A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.☆10Apr 6, 2021Updated 4 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆13Jan 29, 2021Updated 5 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Mar 22, 2026Updated last week
- Tool to parse + perform NLP on web articles.☆17Sep 22, 2023Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆49Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆56Mar 4, 2026Updated 3 weeks ago
- Ontology mapping for Open Targets☆22Mar 19, 2026Updated last week
- ☆31Nov 24, 2020Updated 5 years ago
- View a list of JSON-serializable dictionaries or a 2-D array, in HandsOnTable, in Jupyter Notebook.☆13Oct 11, 2018Updated 7 years ago
- MedGraph is a project focused to construct biomedical knowledge graph. It harnesses the power of pubMed for data retrieval, spaCy for NLP…☆13Jan 11, 2024Updated 2 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- Demo of pointblank / projmgr / GitHub Actions / Slack workflow for data quality monitoring☆16Mar 29, 2023Updated 3 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆31Sep 7, 2023Updated 2 years ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Extension to Python-Markdown to translate pydantic's model fields to markdown table☆12Apr 19, 2024Updated last year
- ☆11Apr 8, 2022Updated 3 years ago
- Smart grid tables will convert ascii grid tables to proper html grid tables.☆18Dec 23, 2018Updated 7 years ago
- Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy☆25Sep 7, 2022Updated 3 years ago
- Medium Article☆11May 15, 2021Updated 4 years ago
- npm package for accessing UMLS REST APIs (unofficial)☆11May 7, 2023Updated 2 years ago
- ⚡️ Pandas dataframes with object oriented programming style (not maintained)☆11Mar 17, 2024Updated 2 years ago
- Text mining tool to retrieve protein-protein interactions from the scientific literature.☆13Jun 9, 2019Updated 6 years ago
- Tutorial on probabilistic classification and cost-sensitive learning.☆13Aug 19, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Dec 17, 2025Updated 3 months ago
- React Inline Autocomplete☆13Oct 10, 2020Updated 5 years ago
- Ant Design (v5) components for Plotly Dash☆14Feb 16, 2023Updated 3 years ago
- Birgitta is a Python ETL test and schema framework, providing automated tests for pyspark notebooks/recipes.☆14Nov 9, 2023Updated 2 years ago
- A collection of Pandas helper functions.☆13Apr 4, 2023Updated 2 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Jan 10, 2019Updated 7 years ago
- This python tool enables a variety of mappings of ICD codes (International Classification of Diseases) to different medical concepts with…☆44Mar 3, 2026Updated 3 weeks ago