dermatologist / ckblib
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
☆16Updated 10 months ago
Alternatives and similar repositories for ckblib
Users that are interested in ckblib are comparing it to the libraries listed below
Sorting:
- UMLS Graph database for semantic queries☆21Updated 2 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆31Updated 2 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- ☆67Updated 2 years ago
- A near real-time named-entity recognizer☆60Updated 11 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆44Updated this week
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated 11 months ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆39Updated 2 weeks ago
- Biomedical Entity Linking Benchmark☆13Updated 5 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 2 months ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆55Updated 5 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- Python module to parse UMLS source files☆19Updated 2 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- a customzable pipeline for information extraction☆17Updated this week
- Biomedical Term Annotator☆9Updated 2 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆17Updated 3 weeks ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated 2 weeks ago