Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
☆16Jun 27, 2024Updated last year
Alternatives and similar repositories for ckblib
Users that are interested in ckblib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 6 months ago
- npm package for accessing UMLS REST APIs (unofficial)☆11May 7, 2023Updated 2 years ago
- Template for multi-modal machine learning in healthcare using Kedro. Combine reports, tabular data and images using various fusion method…☆24Mar 21, 2025Updated last year
- NPM module to convert FHIR Questionnaire JSON to JSON Schema for form rendering.☆22Mar 9, 2026Updated 2 weeks ago
- Drishti | An Open mHealth sense-plan-act framework based on FHIR!☆11Oct 7, 2022Updated 3 years ago
- The FHIRForm framework for managing healthcare eForms☆17Oct 5, 2022Updated 3 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆44Mar 14, 2026Updated last week
- An R package for statistics and machine learning with persistence diagrams☆18Oct 28, 2024Updated last year
- Patient-Specific Modeling in Python☆19Mar 16, 2026Updated last week
- ☆14Apr 15, 2024Updated last year
- VisBERT: Demo web app for "How Does BERT Answer Questions?"☆11Jul 22, 2023Updated 2 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆60Updated this week
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Nov 20, 2020Updated 5 years ago
- Python utilities for working with Obsidian vaults.☆14Oct 1, 2021Updated 4 years ago
- ☆12Oct 9, 2024Updated last year
- A library for calculating clinical quality measures☆28Jul 22, 2022Updated 3 years ago
- This repository contains the complete source code of the MedTAG annotation tool. MedTAG is a biomedical annotation tool for tagging biome…☆12Jan 1, 2023Updated 3 years ago
- Readavocado obsidian plugin to sync your favorite highlights.☆10Oct 4, 2022Updated 3 years ago
- Qualitative Research support tools in Python☆58Oct 13, 2025Updated 5 months ago
- This python tool enables a variety of mappings of ICD codes (International Classification of Diseases) to different medical concepts with…☆44Mar 3, 2026Updated 3 weeks ago
- automatic generate the Curriculum Vitae☆19Mar 15, 2026Updated last week
- Tree Search Molecular Dynamics Simulation☆11Aug 25, 2019Updated 6 years ago
- Standard Health Record☆18Oct 29, 2019Updated 6 years ago
- A Fast Self-Organizing Map Python Library Implemented in Numba☆23Dec 16, 2025Updated 3 months ago
- Slides for my talk at Solid World January 2022☆10Jan 13, 2022Updated 4 years ago
- A Repository for Polygenic Indexes☆14May 29, 2023Updated 2 years ago
- Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice)☆11Mar 30, 2023Updated 2 years ago
- ☆13Jul 24, 2025Updated 7 months ago
- curated list of trust regisry systems, vendors, and ecoystems☆14Jun 26, 2025Updated 8 months ago
- Adds support for Wikilink pipe tricks in Obsidian.☆22Jan 24, 2023Updated 3 years ago
- ☆14Jan 3, 2024Updated 2 years ago
- ☆15Apr 28, 2020Updated 5 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- FHIR Resources implemented with json-schema and node-simple-schema☆30Feb 9, 2018Updated 8 years ago
- Search comments and highlights annotations in PDF documents.☆12May 4, 2023Updated 2 years ago
- Obsidian plugin for managing aliases for Johnny Decimal-indexed notes☆16Aug 10, 2021Updated 4 years ago
- Logic-based meal optimizer☆17Aug 13, 2021Updated 4 years ago
- How to run Panoply Git GNU/Linux (the version of FRDCSA made by combining all of the redacted GitHub FRDCSA codebases)☆12Dec 19, 2022Updated 3 years ago