dermatologist / ckblibLinks
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
☆16Updated last year
Alternatives and similar repositories for ckblib
Users that are interested in ckblib are comparing it to the libraries listed below
Sorting:
- Repository for paper 'Neural networks for open and closed Literature-based Discovery'☆9Updated 5 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- ☆68Updated 3 years ago
- UMLS Graph database for semantic queries☆23Updated 2 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆83Updated 2 weeks ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- ☆55Updated 5 years ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆22Updated 3 years ago
- Python module to parse UMLS source files☆20Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆22Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 2 weeks ago
- A near real-time named-entity recognizer☆61Updated 3 weeks ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 3 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Biomedical Term Annotator☆9Updated 5 months ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 5 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- ☆17Updated 4 years ago