dermatologist / ckblibLinks
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
☆16Updated last year
Alternatives and similar repositories for ckblib
Users that are interested in ckblib are comparing it to the libraries listed below
Sorting:
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- UMLS Graph database for semantic queries☆22Updated 2 years ago
- Repository for paper 'Neural networks for open and closed Literature-based Discovery'☆9Updated 5 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- ☆67Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated last week
- Medical Relations and Entities Extraction☆36Updated 3 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- A near real-time named-entity recognizer☆61Updated this week
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 2 months ago
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆13Updated 2 years ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated 3 weeks ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆21Updated 3 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- ☆16Updated 4 years ago
- Transform the OMOP model to graph model☆22Updated 7 months ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemica…☆16Updated 4 years ago
- Medical Similarity Dataset creation from SNOMED☆28Updated 3 years ago
- Web interface that allows users to perform computer-assisted text annotation☆16Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆22Updated 3 years ago