dermatologist / ckblibLinks
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
☆16Updated last year
Alternatives and similar repositories for ckblib
Users that are interested in ckblib are comparing it to the libraries listed below
Sorting:
- UMLS Graph database for semantic queries☆22Updated 2 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Biomedical Term Annotator☆9Updated 4 months ago
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- Python module to parse UMLS source files☆19Updated 2 years ago
- Biomedical Entity Linking Benchmark☆13Updated 6 months ago
- A near real-time named-entity recognizer☆61Updated last year
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- ☆67Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Medical Relations and Entities Extraction☆36Updated 3 years ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated 3 weeks ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated last month
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Transform the OMOP model to graph model☆22Updated 6 months ago
- ☆55Updated 5 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- Repository for paper 'Neural networks for open and closed Literature-based Discovery'☆9Updated 5 years ago
- a customzable pipeline for information extraction☆17Updated last month
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆42Updated last week
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 4 months ago