dermatologist / ckblib
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
☆16Updated 8 months ago
Alternatives and similar repositories for ckblib:
Users that are interested in ckblib are comparing it to the libraries listed below
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆28Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Python module to parse UMLS source files☆19Updated 2 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- Biomedical Entity Linking Benchmark☆11Updated 3 months ago
- ☆66Updated 2 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆20Updated 3 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated 11 months ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated 10 months ago
- a customzable pipeline for information extraction☆15Updated 3 weeks ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated this week
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Repository for paper 'Neural networks for open and closed Literature-based Discovery'☆9Updated 4 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- ☆26Updated 4 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆23Updated 3 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- ☆53Updated 4 years ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆23Updated 2 weeks ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Biomedical Term Annotator☆9Updated 3 weeks ago
- jayetri / DrugEHRQA-A-Question-Answering-Dataset-on-Structured-and-Unstructured-Electronic-Health-Records☆9Updated 2 years ago
- A near real-time named-entity recognizer☆59Updated 9 months ago