clinicalml / prancerLinks
Platform enabling Rapid Annotation for Clinical Entity Recognition
☆49Updated 3 years ago
Alternatives and similar repositories for prancer
Users that are interested in prancer are comparing it to the libraries listed below
Sorting:
- ☆55Updated 5 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Updated 4 years ago
- ☆101Updated 3 years ago
- Medical Similarity Dataset creation from SNOMED☆28Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- Weakly supervised medical named entity classification☆72Updated 3 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- ☆23Updated 3 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆153Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 10 months ago
- ☆67Updated 3 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆49Updated 4 years ago
- Biomedical Data-to-Text Generation via Fine-Tuning Transformers☆29Updated 4 years ago
- ☆77Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- This repository contains machine learning related work for the corpus to graph project, including Jupyter research notebooks and a Flask …☆46Updated 9 years ago
- A project for developing transformer-based models for clinical relation extraction☆130Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- A PyPI package for easy text annotation in a Jupyter Notebook.☆29Updated 4 years ago
- ☆18Updated 5 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 6 years ago