clinicalml / prancer
Platform enabling Rapid Annotation for Clinical Entity Recognition
☆50Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for prancer
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆72Updated last week
- ☆51Updated 4 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆29Updated 5 months ago
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- ☆95Updated 2 years ago
- ☆65Updated 2 years ago
- Weakly supervised medical named entity classification☆70Updated last year
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- BioELECTRA☆51Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆47Updated 6 months ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆34Updated 9 months ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆44Updated 4 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- ☆90Updated 5 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆26Updated last year
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Biomedical Data-to-Text Generation via Fine-Tuning Transformers☆29Updated 2 years ago
- ☆27Updated 3 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆19Updated 4 years ago
- ☆24Updated 3 years ago
- ☆38Updated 2 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆46Updated 3 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago