Alternatives and similar repositories for UMLS-Graph:

Users that are interested in UMLS-Graph are comparing it to the libraries listed below

• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆43Updated 11 months ago
• dhchenx / umls-similarity
  Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
  ☆16Updated 3 years ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆38Updated 11 months ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated 8 months ago
• kbogas / medknow
  Medical Relations and Entities Extraction
  ☆36Updated 2 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆41Updated 9 months ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 9 months ago
• dhchenx / umls-graph
  Build a medical knowledge graph based on Unified Language Medical System (UMLS)
  ☆20Updated 3 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 9 months ago
• LHNCBC / SemRep
  ☆65Updated 2 years ago
• lasigeBioTM / PGR
  A Silver Standard Corpus of Human Phenotype-Gene Relations
  ☆13Updated 2 years ago
• RTXteam / RTX-KG2
  Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆40Updated last week
• beamandrew / cui2vec
  ☆52Updated 4 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆28Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 2 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• DATEXIS / UMLSParser
  Python module to parse UMLS source files
  ☆19Updated 2 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• bio-ontology-research-group / opa2vec
  Turning Ontologies Plus Annotation Properties into Vectors
  ☆35Updated 4 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆79Updated this week
• dchang56 / snomed_kge
  ☆26Updated 4 years ago
• reality / komenti
  Semantic query and text mining tool
  ☆22Updated last year
• ncbo / umls2rdf
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…
  ☆86Updated 6 months ago
• OHDSI / ClinicalTrialsWGETL
  [under development] ETL materials to support proposal for CDM enhancements for clinical trial data
  ☆23Updated 3 years ago
• OHNLP / MedXN
  MedXN is a medication normalization system built upon Apache UIMA framework.
  ☆23Updated last year
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year