Alternatives and similar repositories for UMLS-Graph

Users that are interested in UMLS-Graph are comparing it to the libraries listed below

• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 5 years ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 4 years ago
• dhchenx / umls-graph
  Build a medical knowledge graph based on Unified Language Medical System (UMLS)
  ☆26Updated 4 years ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆63Updated last week
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆96Updated 2 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆200Updated last year
• kbogas / medknow
  Medical Relations and Entities Extraction
  ☆37Updated 3 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆44Updated last week
• dhchenx / umls-similarity
  Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
  ☆16Updated 4 years ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated last year
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• bio-ontology-research-group / machine-learning-with-ontologies
  ☆130Updated 3 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• gmichalo / UmlsBERT
  ☆101Updated 3 years ago
• ncbo / umls2rdf
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…
  ☆86Updated last year
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated 5 months ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆80Updated 3 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆32Updated last year
• DATEXIS / UMLSParser
  Python module to parse UMLS source files
  ☆20Updated 2 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆47Updated last month
• rossanez / KGen
  Knowledge graphs generation from unstructured text.
  ☆71Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 8 months ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆88Updated 3 years ago
• clinicalml / HealthKnowledgeGraph
  Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data
  ☆104Updated 5 years ago
• bio-ontology-research-group / opa2vec
  Turning Ontologies Plus Annotation Properties into Vectors
  ☆35Updated 5 years ago
• fhircat / FHIROntopOMOP
  FHIR Ontop OMOP Implementation
  ☆20Updated last year