Alternatives and similar repositories for umls-similarity:

Users that are interested in umls-similarity are comparing it to the libraries listed below

• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆43Updated last year
• dbmi-pitt / UMLS-Graph
  UMLS Graph database for semantic queries
  ☆20Updated 2 years ago
• dhchenx / umls-graph
  Build a medical knowledge graph based on Unified Language Medical System (UMLS)
  ☆20Updated 3 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆28Updated last year
• kbogas / medknow
  Medical Relations and Entities Extraction
  ☆36Updated 2 years ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated 9 months ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 10 months ago
• AberystwythSystemsBiology / MEDIALpy
  A small python package that allows the user to look up common medical abbreviations.
  ☆12Updated 2 years ago
• DATEXIS / UMLSParser
  Python module to parse UMLS source files
  ☆19Updated 2 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• dchang56 / snomed_kge
  ☆27Updated 4 years ago
• noc-lab / clinical-kb-bert
  ☆17Updated 4 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 3 years ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆26Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆24Updated 3 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 10 months ago
• suamin / MedDistant19
  MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)
  ☆17Updated 2 years ago
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated 2 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 2 years ago
• IHTSDO / llm-chain-entity-extraction
  ☆24Updated 3 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated 3 months ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated 3 weeks ago
• Bin-Chen-Lab / metamap
  A short tutorial to map biomedical free-text into UMLS concepts using MetaMap
  ☆28Updated last year
• RyanDsilva / medical-ner
  Clinical NER with UMLS lookup
  ☆22Updated 5 years ago
• LHNCBC / SemRep
  ☆67Updated 2 years ago
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated last month
• OHDSI / ClinicalTrialsWGETL
  [under development] ETL materials to support proposal for CDM enhancements for clinical trial data
  ☆24Updated 3 years ago
• lasigeBioTM / PGR
  A Silver Standard Corpus of Human Phenotype-Gene Relations
  ☆13Updated 2 years ago