dhchenx / umls-similarity
Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
☆16Updated 3 years ago
Alternatives and similar repositories for umls-similarity:
Users that are interested in umls-similarity are comparing it to the libraries listed below
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated 11 months ago
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆20Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆28Updated last year
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated 8 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆38Updated 11 months ago
- ☆17Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- ☆26Updated 4 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 9 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- PyPI Package: An easy-to-use medication/drug code mapping tool☆19Updated last year
- Python module to parse UMLS source files☆19Updated 2 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆23Updated 3 years ago
- A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.☆10Updated 3 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 3 weeks ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆23Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆43Updated 4 months ago
- A convolutional neural network model for relation extraction.☆13Updated last year
- A small python package that allows the user to look up common medical abbreviations.☆12Updated 2 years ago
- Web interface that allows users to perform computer-assisted text annotation☆16Updated 2 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆27Updated last year
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- A near real-time named-entity recognizer☆59Updated 9 months ago
- Github repo for the Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification, code and data | Paper: https://ar…☆14Updated last year
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆18Updated 11 months ago