dhchenx / umls-similarityLinks
Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
☆16Updated 3 years ago
Alternatives and similar repositories for umls-similarity
Users that are interested in umls-similarity are comparing it to the libraries listed below
Sorting:
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆25Updated 3 years ago
- UMLS Graph database for semantic queries☆25Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated last year
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 2 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.☆10Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- ☆23Updated 2 years ago
- BioMedICUS: A biomedical and clinical NLP engine.☆20Updated 3 weeks ago
- A near real-time named-entity recognizer☆62Updated 4 months ago
- A small python package that allows the user to look up common medical abbreviations.☆12Updated 3 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆30Updated 2 years ago
- UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT …☆15Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- ☆18Updated 5 years ago
- PyPI Package: An easy-to-use medication/drug code mapping tool☆19Updated 2 years ago
- Knowledge graphs generation from unstructured text.☆71Updated 9 months ago
- ☆70Updated 3 years ago
- ☆27Updated 5 months ago
- Python module to parse UMLS source files☆20Updated 2 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆43Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 8 months ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆91Updated 3 years ago