AstraZeneca / KAZULinks
Fast, world class biomedical NER
☆87Updated 4 months ago
Alternatives and similar repositories for KAZU
Users that are interested in KAZU are comparing it to the libraries listed below
Sorting:
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆27Updated 6 months ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆190Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 2 months ago
- NetworkX-based Python library for representing ontologies☆90Updated 2 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆116Updated 3 years ago
- a customzable pipeline for information extraction☆17Updated last month
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.☆97Updated last year
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆122Updated 3 weeks ago
- Text annotation tool for team collaboration☆41Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆192Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 4 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated this week
- ☆67Updated 3 years ago
- Biomedical Entity Linking Benchmark☆13Updated 7 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- OntoBrowser is a web-based application for managing ontologies☆42Updated 2 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated 6 months ago
- ☆218Updated 7 months ago
- Recognize bio-medical entities from a text corpus☆124Updated last year
- ☆18Updated 5 months ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆61Updated 2 weeks ago
- Tools for curating biomedical training data for large-scale language modeling☆481Updated 7 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆89Updated last year
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆88Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆44Updated 2 weeks ago