NUSCRIPT / OMOP_to_GraphLinks
Transform the OMOP model to graph model
☆27Updated last year
Alternatives and similar repositories for OMOP_to_Graph
Users that are interested in OMOP_to_Graph are comparing it to the libraries listed below
Sorting:
- FHIR Ontop OMOP Implementation☆20Updated last year
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Updated 2 years ago
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆46Updated 8 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- ETL UK-Biobank☆16Updated 3 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29Updated 4 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- ☆31Updated 7 years ago
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆200Updated last year
- OntoBrowser is a web-based application for managing ontologies☆44Updated 2 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆57Updated last week
- An R package for evaluating phenotype algorithms.☆21Updated 2 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- ☆14Updated 11 months ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 5 months ago
- ☆17Updated 7 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Updated 3 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last week
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- Outcomes Insights' Data Model for Clinical Research☆19Updated 5 months ago
- NCATS Biomedical Translator Reasoners Standard API☆40Updated last week
- Repository for development of the genomic module of the CDM.☆25Updated 6 years ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆71Updated last week
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆66Updated 7 months ago
- ETL Tool for converting datasets to OMOP CDM☆35Updated 3 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- An R package for performing various cohort diagnostics.☆48Updated this week
- using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)☆10Updated 3 years ago
- Ontology mapping for Open Targets☆21Updated 3 weeks ago