Transform the OMOP model to graph model
☆27Dec 13, 2024Updated last year
Alternatives and similar repositories for OMOP_to_Graph
Users that are interested in OMOP_to_Graph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Easy integration of heterogeneous iterable data within Semantic Knowledge Graphs databases.☆20May 29, 2026Updated 2 weeks ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- Use Amazon Comprehend Medical to extract medical insight from notes inside the OMOP Common Data Model☆14Feb 28, 2019Updated 7 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆37Jan 2, 2024Updated 2 years ago
- FHIR Ontop OMOP Implementation☆21May 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆91Apr 24, 2026Updated last month
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Nov 1, 2019Updated 6 years ago
- Clinical oncology tumor board decision support system made by the Decider project.☆14Apr 22, 2026Updated last month
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆30May 28, 2021Updated 5 years ago
- ☆17Sep 14, 2018Updated 7 years ago
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆49May 22, 2025Updated last year
- C++ "spatial" logging system which targets versatile, (de)clutchable, _debugging_, in a single header.☆17Mar 28, 2026Updated 2 months ago
- Repository for development of the genomic module of the CDM.☆26Jun 14, 2019Updated 7 years ago
- Integrated OBO ontology store☆51Feb 13, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.☆11Updated this week
- Mapping the MIMIC-III database to the OMOP schema☆147Mar 17, 2024Updated 2 years ago
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆27Apr 16, 2021Updated 5 years ago
- ETL Tool for converting datasets to OMOP CDM☆37Nov 24, 2022Updated 3 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆64Updated this week
- The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.☆107Updated this week
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 8 months ago
- ☆32Jul 2, 2018Updated 7 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆129Mar 23, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Semantic prefix map registry☆14May 9, 2026Updated last month
- Cytoscape plugin for neo4j☆21Aug 15, 2025Updated 9 months ago
- Load and analyze FDA Adverse Event Reporting System data with Neo4j☆30May 10, 2024Updated 2 years ago
- An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.☆15Oct 20, 2022Updated 3 years ago
- This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.☆87Mar 25, 2026Updated 2 months ago
- Cohort Generation for the OMOP Common Data Model☆14Mar 2, 2026Updated 3 months ago
- Benchmark Datasets for BioNLP Tasks☆17May 7, 2025Updated last year
- Code for Contextual Autocomplete paper published in MLHC2020☆12Aug 7, 2021Updated 4 years ago
- ☆13Sep 11, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Data Ingestion and Harmonization☆46Mar 17, 2026Updated 2 months ago
- Genomic sequence preprocessing toolkit☆13Updated this week
- ☆29Jul 15, 2023Updated 2 years ago
- Outcomes Insights' Data Model for Clinical Research☆20May 6, 2026Updated last month
- Knowledge Graph-based Retrieval-Augmented Generation for Schema Matching☆16Mar 6, 2026Updated 3 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆16Sep 28, 2020Updated 5 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago