DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.
☆249Oct 28, 2026Updated last week
Alternatives and similar repositories for DeepTrack2
Users that are interested in DeepTrack2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆45Oct 26, 2020Updated 6 years ago
- Deeplay is a deep learning library in Python that extends PyTorch with additional functionalities focused on modularity and reusability.☆28Oct 28, 2026Updated last week
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated 3 months ago
- Transformer-based cell tracking for live-cell microscopy☆160Sep 11, 2026Updated last month
- ExTrack MLE for diffusive noisy single-particle tracks☆16Sep 18, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 7 months ago
- Python libraries for loading, running and packaging bioimage.io models☆40Oct 28, 2026Updated last week
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- TrackMate is your buddy for your everyday tracking.☆244Oct 24, 2026Updated last week
- Python particle tracking toolkit☆518Oct 12, 2026Updated 3 weeks ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- napari plugin for trackastra☆19Jul 16, 2026Updated 3 months ago
- Colab Notebooks implementing training and inference for the methods of several contestants participating in the 2021 CTC edition, in orde…☆12Sep 28, 2022Updated 4 years ago
- Official implementation of the Nature Methods 2020 paper: "DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning"…☆63Apr 29, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".☆13Jul 19, 2024Updated 2 years ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆658Updated this week
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆42Updated this week
- This is the repository for paper "Deep learning method for data association in particle tracking"☆14Nov 11, 2019Updated 6 years ago
- Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the …☆32Oct 1, 2026Updated last month
- Official implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"☆58Aug 9, 2020Updated 6 years ago
- Segment Anything for Microscopy☆744Updated this week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆94Aug 24, 2026Updated 2 months ago
- Simulation of Complex Systems - Book - Example codes☆42Sep 11, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated 2 years ago
- ☆12Feb 2, 2026Updated 9 months ago
- Multi-Object Tracking with Integer Linear Equations☆42Jul 21, 2026Updated 3 months ago
- ☆20May 5, 2023Updated 3 years ago
- Accurate and efficient spot detection for microscopy data☆147Jun 8, 2026Updated 4 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆138Apr 9, 2020Updated 6 years ago
- This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accur…☆123Jun 22, 2023Updated 3 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆133Oct 27, 2026Updated last week
- Accurate, generalizable and user-friendly 3D cell segmentation☆18Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python algorithm for tracking cells in 3D deforming organs☆70Nov 13, 2025Updated 11 months ago
- probabilistic particle tracking velocimetry framework☆11Aug 10, 2026Updated 2 months ago
- Joint training of denoising and segmentation.☆76Aug 29, 2023Updated 3 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆244Sep 11, 2023Updated 3 years ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- ☆53May 1, 2025Updated last year
- ☆13Jun 18, 2026Updated 4 months ago