klasma / BaxterAlgorithmsLinks
Software for segmentation, tracking and analysis of cells in microscope image sequences.
☆43Updated last year
Alternatives and similar repositories for BaxterAlgorithms
Users that are interested in BaxterAlgorithms are comparing it to the libraries listed below
Sorting:
- The U-Net Segmentation plugin for Fiji (ImageJ)☆89Updated 3 years ago
- Cell tracker designed for tracking intestinal organoids☆31Updated last week
- official implementation of the PatchPerPix instance segmentation method☆34Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- MPM: Joint Representation of Motion and Position Map for Cell Tracking☆42Updated 4 years ago
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Updated 5 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- ☆17Updated 7 years ago
- Instance segmentation via deep pixel embedding☆23Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Updated last year
- U-net based segmentation of nuclei in microscopy images☆52Updated 7 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Updated 3 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆50Updated 2 months ago
- A python algorithm for tracking cells in 3D deforming organs☆65Updated 3 weeks ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 3 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆184Updated this week
- Code for the paper "An Improved Joint Optimization of Multiple Level Set Functions for the Segmentation of Overlapping Cervical Cells" pu…☆31Updated 9 years ago
- ☆18Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆26Updated 2 months ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Updated 7 years ago
- Dense Steerable Filter CNN☆77Updated 3 years ago
- ☆24Updated 5 years ago