qiime2 / qiime2Links
Source for the QIIME 2 Framework (Q2F).
☆511Updated this week
Alternatives and similar repositories for qiime2
Users that are interested in qiime2 are comparing it to the libraries listed below
Sorting:
- A complete pipeline for metagenomic analysis☆424Updated last week
- Fast genome-wide functional annotation through orthology assignment☆645Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆608Updated last year
- Code, unit tests, and tutorials for running PICRUSt2☆367Updated 4 months ago
- The second version of the Kraken taxonomic sequence classification system☆817Updated last month
- Phylogenetic orthology inference for comparative genomics☆790Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆544Updated last month
- Gene cluster comparison figure generator☆606Updated 9 months ago
- bioBakery tools for meta'omic profiling☆285Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆538Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆468Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆395Updated 3 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆438Updated 2 years ago
- Genome assembly evaluation tool☆458Updated 9 months ago
- A quality control analysis tool for high throughput sequencing data☆526Updated 2 weeks ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆453Updated 8 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆353Updated this week
- Accurate sample inference from amplicon data with single nucleotide resolution☆516Updated last month
- Tutorials on phylogenetic and phylogenomic inference☆388Updated last year
- A grammar of graphics for comparative genomics☆693Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆361Updated 2 months ago
- Rapid prokaryotic genome annotation☆930Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆380Updated 3 weeks ago
- Rapid haploid variant calling and core genome alignment☆542Updated last year
- 🌈 Interactive analysis of metagenomics data☆422Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆361Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆431Updated 3 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆523Updated 5 months ago
- Prodigal Gene Prediction Software☆496Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆434Updated 2 weeks ago