qiime2 / qiime2Links
Source for the QIIME 2 Framework (Q2F).
☆526Updated last week
Alternatives and similar repositories for qiime2
Users that are interested in qiime2 are comparing it to the libraries listed below
Sorting:
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆455Updated last year
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆376Updated last month
- A complete pipeline for metagenomic analysis☆440Updated 2 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆856Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- Rapid haploid variant calling and core genome alignment☆557Updated 3 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆387Updated 2 weeks ago
- Phylogenetic orthology inference for comparative genomics☆822Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆582Updated 3 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆466Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆452Updated 2 years ago
- Rapid prokaryotic genome annotation☆946Updated 2 weeks ago
- Genome assembly evaluation tool☆488Updated last year
- 🌈 Interactive analysis of metagenomics data☆438Updated 3 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆530Updated 2 weeks ago
- A quality control analysis tool for high throughput sequencing data☆561Updated 2 weeks ago
- Interactively explore metagenomes and more from a web browser.☆491Updated 4 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆452Updated 7 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆559Updated 3 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆362Updated last month
- Gene cluster comparison figure generator☆627Updated last week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 3 months ago
- Prodigal Gene Prediction Software☆523Updated last year
- Versatile open-source tool for microbiome analysis☆730Updated 3 weeks ago
- SPAdes Genome Assembler☆887Updated 2 weeks ago
- Fast Whole-Genome Similarity (ANI) Estimation☆445Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆492Updated 2 weeks ago
- ATLAS - Three commands to start analyzing your metagenome data☆400Updated last month
- bioBakery tools for meta'omic profiling☆299Updated 6 months ago