Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
☆33Jun 9, 2024Updated last year
Alternatives and similar repositories for AlphaPPImd
Users that are interested in AlphaPPImd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- Conformational sampling for highly flexible proteins☆15Jan 31, 2025Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 11 months ago
- ☆20Oct 3, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆25Jan 15, 2026Updated 4 months ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆44Nov 20, 2025Updated 6 months ago
- Weighted Ensemble Data Analysis and Plotting☆27Dec 11, 2025Updated 5 months ago
- Generate intrinsically disordered peptide conformations via machine learning☆25May 26, 2024Updated last year
- DyNoPy☆11Sep 5, 2024Updated last year
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Analysis of alphafold and colabfold results☆47May 11, 2026Updated last week
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- Frankies Scalable, AI-Based Antibody Design Pipeline☆19Feb 20, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆24May 19, 2025Updated last year
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆62Apr 6, 2026Updated last month
- ☆34Oct 14, 2024Updated last year
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆13Jul 9, 2025Updated 10 months ago
- List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fie…☆293May 12, 2026Updated last week
- ☆15Feb 18, 2025Updated last year
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆66Aug 26, 2025Updated 8 months ago
- ☆15Jun 3, 2025Updated 11 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Mar 28, 2025Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆352Jun 11, 2025Updated 11 months ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 3 years ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 11 months ago
- Access to data for workshops and extended tests of MDAnalysis.☆19Apr 3, 2026Updated last month
- ☆40Sep 17, 2024Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆174Feb 6, 2026Updated 3 months ago
- ☆34May 14, 2026Updated last week
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Disordered protein ensemble prediction☆14Apr 2, 2026Updated last month
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆102Oct 16, 2025Updated 7 months ago
- ☆64May 13, 2026Updated last week
- A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.☆38Jul 29, 2023Updated 2 years ago
- Fragment Linker Prediction Using Deep Encoder-Decoder Network for PROTAC Drug Design☆13Oct 2, 2023Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆58Jul 9, 2025Updated 10 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆78May 9, 2026Updated last week