Alternatives and similar repositories for StratiPy:

Users that are interested in StratiPy are comparing it to the libraries listed below

• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆17Updated 6 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆53Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆58Updated 3 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• mstrazar / iONMF
  Integrative orthogonal non-negative matrix factorization
  ☆31Updated 5 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆37Updated last year
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• bioFAM / slalom
  ☆28Updated last year
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆38Updated 3 months ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆23Updated last year
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated last year
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆24Updated 7 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆41Updated 2 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆43Updated last year
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 5 years ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆27Updated 9 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆49Updated 3 months ago
• ushaham / BatchEffectRemoval
  ☆55Updated 4 years ago
• auranic / Elastic-principal-graphs
  Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method
  ☆14Updated 2 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 4 years ago
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆16Updated 3 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆26Updated 2 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 7 years ago