ppsp-team / StratiPy
Graph regularized nonnegative matrix factorization (GNMF) in Python
☆45Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for StratiPy
- Source code for integrative nonnegative matrix factorization☆16Updated 6 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆57Updated 3 years ago
- Concise: Keras extension for regulatory genomics☆34Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆48Updated last month
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆50Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated last month
- Assembles a graph manifold from time series single-cell RNAseq data☆16Updated 3 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Deep Feature Interaction Maps (DFIM)☆52Updated 5 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- Integrative orthogonal non-negative matrix factorization☆32Updated 5 years ago
- ☆55Updated 4 years ago
- A library to simulate single-cell data☆2Updated last year
- ☆28Updated last year
- ☆19Updated 3 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- GrandPrix☆16Updated 5 years ago
- ☆63Updated last year
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆25Updated 7 months ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- Single-cell Hierarchical Poisson Factorization☆66Updated 2 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆38Updated 3 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 3 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated last year
- Fast Inference of Networks from Directed Regulations☆21Updated 11 months ago