Graph regularized nonnegative matrix factorization (GNMF) in Python
☆47Mar 27, 2020Updated 6 years ago
Alternatives and similar repositories for StratiPy
Users that are interested in StratiPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Oct 18, 2024Updated last year
- Theano-based implementation of Deep Semi-NMF.☆121Nov 16, 2015Updated 10 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated 2 years ago
- code for paper "Attributed Network Embedding via Subspace Discovery"☆21Jan 12, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Feature Extraction via Multi-view Non-negative Matrix Factorization with Local Graph Regularization.☆22Jun 30, 2015Updated 11 years ago
- Fast graph-regularized matrix factorization☆20Oct 3, 2023Updated 2 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- all-paths graph kernel for protein-protein interaction extraction☆12Apr 22, 2014Updated 12 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 5 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- Source code for the published paper "Self-Weighted Multiview Clustering with Multiple Graphs" IJCAI 2017.☆17Dec 4, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- Partial Multi View Clustering via NMF☆38Nov 30, 2018Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆43Jan 30, 2023Updated 3 years ago
- A helper repository for converting Jupyter notebooks into a wordpress-friendly format☆12Dec 11, 2016Updated 9 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Prize-Collecting Steiner Forests for Interactomes☆65Jun 18, 2024Updated 2 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Model-free policy gradient algorithm for LQR☆10Apr 8, 2020Updated 6 years ago
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 8 years ago
- A fast MATLAB implementation of the Weisfeiler--Lehman graph transformation and associated kernel.☆11Oct 25, 2017Updated 8 years ago
- This repository contains course materials from JAX-BD2K workshop.☆33May 14, 2019Updated 7 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated 2 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 7 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 4 months ago
- AAAI 17 work☆19May 25, 2017Updated 9 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Jun 25, 2020Updated 6 years ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆47Jul 30, 2026Updated 2 weeks ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- MATLAB code for solving the Euclidean Distance Matrix completion problem.☆10Nov 20, 2017Updated 8 years ago
- R package☆27Aug 16, 2020Updated 5 years ago
- NECO 18: Adaptive structure concept factorization for multiview clustering☆10Mar 21, 2018Updated 8 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago