plantimals / 2vcf
convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
☆50Updated 5 years ago
Related projects: ⓘ
- Ancestry and Kinship Tools☆69Updated last year
- a wee tool for random access into BGZF files.☆83Updated 6 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Genome-wide imputation pipeline☆30Updated last month
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Simple tool to verticalize text delimited files.☆35Updated 4 months ago
- Fast and accurate sequence demultiplexing☆24Updated last month
- utilities for indexing and sequence extraction from FASTA files☆58Updated 3 years ago
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆43Updated 4 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆49Updated 3 months ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Updated 7 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆73Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 3 years ago
- Server wrapper that turns command line tools into web services☆60Updated 6 years ago
- create a gemini-compatible database from a VCF☆55Updated 3 years ago
- ☆65Updated last week
- ☆34Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆78Updated last year
- The command-line interface to GGD☆42Updated last year
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Illumina analysis pipeline☆14Updated 4 years ago
- An awk-like VCF parser☆54Updated 8 months ago
- Smart VCF parser DSL☆81Updated 2 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆60Updated 3 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago