cwarden45 / DTC_ScriptsLinks
Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)
☆19Updated 6 months ago
Alternatives and similar repositories for DTC_Scripts
Users that are interested in DTC_Scripts are comparing it to the libraries listed below
Sorting:
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆52Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆46Updated 5 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- Structural variant merging tool☆50Updated 9 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- CNV screening and annotation tool☆25Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 11 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- ☆40Updated 8 months ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago