cwarden45 / DTC_ScriptsLinks
Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)
☆20Updated 8 months ago
Alternatives and similar repositories for DTC_Scripts
Users that are interested in DTC_Scripts are comparing it to the libraries listed below
Sorting:
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- List of IARC bioinformatics pipelines and resources☆51Updated 3 weeks ago
- An awk-like VCF parser☆56Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Thousand Variant Callers Project Repository☆74Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Cancer Predisposition Sequencing Reporter (CPSR)☆61Updated 4 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ☆46Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆52Updated last year
- for visual evaluation of read support for structural variation☆54Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆35Updated 4 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated last year
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago