cwarden45 / DTC_Scripts
Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)
☆20Updated 4 months ago
Alternatives and similar repositories for DTC_Scripts:
Users that are interested in DTC_Scripts are comparing it to the libraries listed below
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆52Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- An awk-like VCF parser☆56Updated last year
- ☆46Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆58Updated 2 weeks ago
- small RNA analysis from NGS data☆37Updated 7 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Liftover VCF files☆17Updated 8 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- Tip and tricks for VCF files☆21Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago