pesho-ivanov / minSHView external linksLinks
A minimal Python re-implementation of the A* with seed heuristic for exact global alignment (edit distance) in near-linear time
☆22Nov 30, 2024Updated last year
Alternatives and similar repositories for minSH
Users that are interested in minSH are comparing it to the libraries listed below
Sorting:
- ☆25Updated this week
- team lander github repo☆10Aug 7, 2021Updated 4 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Jul 21, 2025Updated 6 months ago
- base-level dotplots from PAF alignments☆30Sep 18, 2025Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- Open-source C++ library for geometry and linear algebra☆22Apr 26, 2017Updated 8 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Dec 1, 2025Updated 2 months ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 5 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Jan 27, 2026Updated 2 weeks ago
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models☆33Jan 7, 2022Updated 4 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 3 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 6 months ago
- avarehelper☆12Aug 15, 2021Updated 4 years ago
- Cuda Miner for BeamHash (Equihash 150,5)☆13Jan 16, 2019Updated 7 years ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 6 months ago
- Software for the Tree-Based Scan Statistic☆13Updated this week
- The 9esim mini tool is a external (or we called extension) LPA on a board, which based on ESP32S3.☆13Dec 19, 2024Updated last year
- Repository of now harmless TREZOR security exploits☆11Jun 14, 2015Updated 10 years ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- Verilog bit slicing for python☆10May 13, 2021Updated 4 years ago
- C++ code and documentation for the MFlash PKDD'16 publication☆10Oct 25, 2016Updated 9 years ago
- Anrodi Trojanı Başka Bir Programla Birleştir☆10Oct 30, 2016Updated 9 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- ☆10Mar 29, 2025Updated 10 months ago
- ☆10Apr 1, 2025Updated 10 months ago
- A library of code snippets used in Latch SDK development☆11Mar 21, 2023Updated 2 years ago
- Project template for STAT-4830☆18Jan 25, 2026Updated 2 weeks ago
- Create three instances in Oracle Cloud Infrastructure using Terraform 0.12 dynamic blocks☆11May 24, 2020Updated 5 years ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 3 years ago
- Bitcoin Hardware Wallet Interaction scripts☆11Jan 30, 2026Updated 2 weeks ago
- Documentation retrieval system to help LLMs navigate less-popular (yet often more powerful) Python libraries☆14May 13, 2024Updated last year
- 서울시 민원 데이터 자동 분류 분석가이드(서울디지털재단)☆12Apr 3, 2021Updated 4 years ago
- Front-end code for Serratus project website☆11Jul 2, 2024Updated last year
- A quantum enhanced, totaly private encryption app that uses true random key generation from zero point energy.☆13Jul 2, 2025Updated 7 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Oct 22, 2025Updated 3 months ago