ratschlab / graph_annotationLinks
Code accompanying the publication for compressed graph annotation
☆13Updated 6 years ago
Alternatives and similar repositories for graph_annotation
Users that are interested in graph_annotation are comparing it to the libraries listed below
Sorting:
- ☆15Updated 9 years ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆75Updated last year
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 8 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Updated 6 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- compacted de Bruijn graph construction in low memory☆100Updated 3 months ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Copy number estimation of highly duplicated sequences☆10Updated 8 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- sequence alignment. global, local, glocal.☆42Updated 9 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 4 years ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Updated 12 years ago