ratschlab / graph_annotation
Code accompanying the publication for compressed graph annotation
☆13Updated 6 years ago
Alternatives and similar repositories for graph_annotation:
Users that are interested in graph_annotation are comparing it to the libraries listed below
- ☆15Updated 9 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 9 months ago
- De Bruijn graph representation in low memory☆36Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 7 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 8 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- ☆18Updated 6 years ago
- reference free variant assembly☆33Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 11 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 4 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- Source code for SimBac, a bacterial genome simulator☆13Updated 7 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Analysis toolkit and programming library for k-mer profiles☆30Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- ☆12Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- http://www.combio.pl/alfree☆23Updated 2 years ago
- Lacer: Accurate Base Quality Score Recalibration using Linear Algebra☆8Updated 3 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago