elucify / blast-docsLinks
Wiki form of BLAST documentation from NCBI
☆16Updated 8 years ago
Alternatives and similar repositories for blast-docs
Users that are interested in blast-docs are comparing it to the libraries listed below
Sorting:
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Genomics Research Container Architecture☆48Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- PacBio BAM C++ library☆21Updated last year
- ☆37Updated 4 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- ☆37Updated 3 months ago
- Lightweight workflows in bioinformatics:☆24Updated 10 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Updated 7 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 8 months ago
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- a string to graph aligner☆41Updated 9 years ago