elucify / blast-docsLinks
Wiki form of BLAST documentation from NCBI
☆16Updated 8 years ago
Alternatives and similar repositories for blast-docs
Users that are interested in blast-docs are comparing it to the libraries listed below
Sorting:
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- a simple read-only sequence database, designed for short reads☆66Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 8 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- FM-index representation of a de Bruijn graph☆27Updated 8 years ago
- ☆73Updated 6 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 5 months ago
- a string to graph aligner☆41Updated 9 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆109Updated last year
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- ☆36Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- sequence alignment. global, local, glocal.☆42Updated 8 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated 2 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Updated 12 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago