pengzhangzhi / Awesome-Computational-Structural-BiologyLinks
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
☆54Updated 3 years ago
Alternatives and similar repositories for Awesome-Computational-Structural-Biology
Users that are interested in Awesome-Computational-Structural-Biology are comparing it to the libraries listed below
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆125Updated last month
- Protein folding in Pymol☆127Updated last month
- Dataset and package for working with protein-protein interactions in 3D☆99Updated 8 months ago
- Sandbox for Deep-Learning based Computational Protein Design☆120Updated 2 weeks ago
- Directed evolution of proteins in sequence space with gradients☆93Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆147Updated 2 weeks ago
- ☆114Updated 3 years ago
- Plugin for folding sequences directly in PyMOL☆112Updated 4 months ago
- Efficient implementatin of ESM family.☆78Updated 3 months ago
- NeurIPS 2024 Dataset and Benchmark Submission "AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction"☆30Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆99Updated last week
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆107Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆87Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆127Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- ☆108Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆140Updated last week
- Generative method to design novel proteins using a diffusion model☆43Updated 2 years ago
- ☆121Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 3 weeks ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆168Updated 2 months ago
- Metrics for our protein design competitions.☆35Updated last year
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 6 months ago
- Official repository of EnzymeFlow☆97Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Updated 2 years ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆88Updated last week
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆90Updated 6 months ago
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆61Updated 3 weeks ago