pengzhangzhi / Awesome-Computational-Structural-Biology
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
☆40Updated 2 years ago
Alternatives and similar repositories for Awesome-Computational-Structural-Biology:
Users that are interested in Awesome-Computational-Structural-Biology are comparing it to the libraries listed below
- ☆97Updated 2 years ago
- Directed evolution of proteins in sequence space with gradients☆80Updated 5 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆97Updated last month
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆45Updated last month
- ☆58Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆88Updated 2 weeks ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆57Updated 2 weeks ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆55Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆57Updated 9 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆63Updated 3 months ago
- SaprotHub: Making Protein Modeling Accessible to All Biologists☆89Updated this week
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 5 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆79Updated 6 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆68Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆72Updated 5 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆49Updated 5 months ago
- ☆41Updated 4 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆93Updated last year
- Protein folding in Pymol☆104Updated last week
- Code for holographic machine learning of proteins☆21Updated 3 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆98Updated 2 months ago
- pyFoldX: python bindings for FoldX.☆43Updated 3 years ago
- ☆72Updated this week
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆43Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆35Updated 2 months ago
- Gibbs sampling for generating protein sequences☆53Updated last week
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆96Updated 4 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆36Updated 4 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆27Updated 2 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year