carlocamilloni / Structural-Bioinformatics
This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202
☆50Updated 7 months ago
Related projects: ⓘ
- A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.☆34Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆20Updated last month
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆56Updated 3 months ago
- ☆26Updated 3 years ago
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆49Updated 4 months ago
- development repository for PyInteraph2☆21Updated last year
- ☆31Updated last month
- ☆57Updated 2 months ago
- ☆24Updated 9 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆23Updated 5 months ago
- PyDock Tutorial☆30Updated 6 years ago
- Protein Structure Analysis☆44Updated last month
- An open-source library for the analysis of protein interactions.☆29Updated 2 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆20Updated this week
- Modelling of Large Protein Complexes☆34Updated 6 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆23Updated 10 months ago
- Cloud-based molecular docking for everyone☆9Updated 2 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆23Updated this week
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆23Updated 7 months ago
- Structure prediction of alternative protein conformations☆66Updated 3 weeks ago
- ☆27Updated 4 months ago
- ☆32Updated 8 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆39Updated 3 weeks ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆61Updated last month
- FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer☆21Updated last month
- This repo contains the collection of codes to find designer interfacial mutations☆16Updated last year
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆25Updated 3 years ago
- Framework for the rapid modeling glycans and glycoproteins.☆28Updated 11 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆57Updated 3 weeks ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆34Updated last year