📝 Automated manuscript validation and submission portal completion
☆207Oct 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for paperpush
Users that are interested in paperpush are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- ☆12Oct 5, 2026Updated last week
- Cookiecutter template for MCP server development with FastMCP☆12Nov 15, 2025Updated 11 months ago
- Spatial transcriptomics foundation model based on Graph Transformer and JEPA☆74Aug 10, 2026Updated 2 months ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 5 months ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆20Sep 16, 2021Updated 5 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year
- ☆21Dec 13, 2023Updated 2 years ago
- A command-line tool to capture hierarchical relationships at scale☆20Oct 7, 2026Updated last week
- Julia package for fast flexible adaptive rejection sampling for log-concave univariate densities.☆21Sep 24, 2026Updated 3 weeks ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 5 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The BioContextAI Registry for biomedical MCP servers☆23Sep 17, 2026Updated last month
- ☆15Jun 23, 2026Updated 3 months ago
- Emending Alignment of Spliced Transcript Reads☆13Jan 19, 2026Updated 8 months ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated last month
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- ☆11Sep 20, 2022Updated 4 years ago
- Class materials for Yale Biostats BIS557☆13Dec 4, 2019Updated 6 years ago
- Agentic Bootstrap deploys teams of AI agents to reveal how much a scientific conclusion depends on hidden analytical choices.☆30Aug 27, 2026Updated last month
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- ☆15Dec 16, 2021Updated 4 years ago
- ☆19Mar 19, 2026Updated 6 months ago
- ☆13May 15, 2026Updated 5 months ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Feb 28, 2022Updated 4 years ago
- A tool for evaluate long-read de novo assembly results☆52Aug 28, 2024Updated 2 years ago
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 5 years ago
- ☆33Jul 9, 2024Updated 2 years ago
- React + Vite application demonstrating the use of the @capacitor-community/sqlite plugin☆11Nov 10, 2021Updated 4 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 5 months ago
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 2 months ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated 2 months ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆18Sep 4, 2024Updated 2 years ago