A command-line tool to capture hierarchical relationships at scale
☆20Nov 4, 2026Updated this week
Alternatives and similar repositories for milk
Users that are interested in milk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust and scalable single-cell signature scoring☆29Updated this week
- Single-cell differential expression☆22Updated this week
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 4 months ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆104Oct 25, 2026Updated last week
- ☆16Apr 8, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆31Oct 30, 2026Updated last week
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆21Oct 12, 2026Updated 3 weeks ago
- A fast, multithreaded reader and writer of bigWig and figwig files.☆31Updated this week
- Pipeline to run scE2G☆70Updated this week
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 3 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆37May 23, 2026Updated 5 months ago
- Names a single-cell RNA library's layout (kit, chemistry, barcode list, strand, library type) from its first reads☆12Oct 14, 2026Updated 3 weeks ago
- Isoform-level spatial transcriptomics analysis☆19May 3, 2026Updated 6 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆18Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Aug 18, 2026Updated 2 months ago
- ☆33Updated this week
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆66Oct 16, 2026Updated 3 weeks ago
- ☆14Jun 20, 2026Updated 4 months ago
- Repository for meK-Means Inference Method☆10Aug 7, 2024Updated 2 years ago
- PubMind is a large language model (LLM)-assisted framework for Publication Mutation and information Discovery, designed to extract varian…☆15Aug 24, 2026Updated 2 months ago
- ☆31Oct 28, 2026Updated last week
- Blazingly fast, streaming duplicate detection for NGS data☆22Updated this week
- ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data☆17Aug 4, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Oct 26, 2026Updated last week
- Reconstructing True 3D Spatial Omics at Single-Cell Resolution☆24May 13, 2026Updated 5 months ago
- A command line utilty for working with BINSEQ files☆51Sep 23, 2026Updated last month
- Like readline but not copyleft☆23Updated this week
- An R package that provides Rust-based interfaces into your favourite bioinformatics, computational biology methods. Also, analyse 1m cell…☆37Updated this week
- ☆16Jan 23, 2025Updated last year
- ☆11Jun 9, 2026Updated 4 months ago
- ☆24Jan 10, 2025Updated last year
- All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout☆148Oct 29, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆22Sep 20, 2026Updated last month
- ☆19Jul 7, 2026Updated 3 months ago
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆72Oct 15, 2026Updated 3 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Oct 20, 2026Updated 2 weeks ago
- Tutorials for the Monod package, which fits CME models to sequencing data.☆16Mar 19, 2025Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆26Jun 8, 2026Updated 4 months ago
- 🌿🫐 bramble: project spliced genomic alignments into transcriptomic space☆20Oct 30, 2026Updated last week