A command-line tool to capture hierarchical relationships at scale
☆20Oct 7, 2026Updated last week
Alternatives and similar repositories for milk
Users that are interested in milk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆28Oct 9, 2026Updated last week
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 5 months ago
- An R package that provides Rust-based interfaces into your favourite bioinformatics, computational biology methods. Also, analyse 1m cell…☆37Updated this week
- ☆16Jan 23, 2025Updated last year
- A Python utility for building FalkorDB databases from CSV inputs☆17Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated 2 years ago
- Spatial transcriptomics foundation model based on Graph Transformer and JEPA☆74Aug 10, 2026Updated 2 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆26Jun 8, 2026Updated 4 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated 2 years ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- ☆22Jul 17, 2024Updated 2 years ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆23Updated this week
- FeatureMAP (Feature-preserving Manifold Approximation and Projection) is an interpratable dimensionality reduction tool.☆21Sep 29, 2026Updated 2 weeks ago
- Spatial and multiomic visualization and analysis library☆76Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆36May 23, 2026Updated 4 months ago
- ESP32 Decent Espresso bridge☆11Oct 5, 2020Updated 6 years ago
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Updated this week
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆98Aug 21, 2026Updated last month
- 📝 Automated manuscript validation and submission portal completion☆207Oct 2, 2026Updated 2 weeks ago
- Deep Boltzmann Machines in R^N dimensions☆11May 14, 2014Updated 12 years ago
- ☆10Sep 15, 2026Updated last month
- ☆36Sep 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 💥 k-mer based variant calling and genotyping — sensitive, fast, and easy to use☆21Updated this week
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- ☆10Feb 1, 2022Updated 4 years ago
- ☆12Jan 8, 2025Updated last year
- ☆24Oct 31, 2025Updated 11 months ago
- Python bindings to UCSC BigWig and BigBed library☆37Sep 14, 2026Updated last month
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- ☆69Apr 22, 2026Updated 5 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated last year
- Project and coding tools for the Center for Innovative Design and Analysis (CIDA)☆11Oct 9, 2026Updated last week
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆70Updated this week
- ☆45Oct 30, 2024Updated last year