Pareto Task Inference in Python
☆23Oct 19, 2026Updated last week
Alternatives and similar repositories for ParTIpy
Users that are interested in ParTIpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis framework for morphological profiling data☆14Updated this week
- ☆24Updated this week
- An AnnData-based framework for integrated proteomics analysis☆30Updated this week
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated 2 years ago
- ☆37Oct 12, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Robust and scalable single-cell signature scoring☆29Updated this week
- AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated co…☆25Oct 11, 2026Updated 2 weeks ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆37May 23, 2026Updated 5 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- LLM-powered personalized daily lists of scientific papers☆137Jan 13, 2026Updated 9 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆83Updated this week
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆103Updated this week
- ☆15Jun 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scPertEval — reference implementations of evaluation protocols (metrics) for single-cell perturbation studies☆16Sep 9, 2026Updated last month
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 10 months ago
- factor models for omics data☆49Oct 23, 2026Updated last week
- Python bindings for SingleR☆16Aug 14, 2026Updated 2 months ago
- A toolkit to test, validate, and improve agentic skills.☆18Updated this week
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 9 months ago
- Basics of the OSCA book☆17Aug 27, 2026Updated 2 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated 2 months ago
- Code to implement the hierarchical cross-entropy loss for single-cell annotation models☆26Jul 17, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- List of Spatial Transcriptomics related Tools organized per category☆211Sep 9, 2026Updated last month
- Build contrasts for models defined with formulaic☆13Oct 19, 2026Updated last week
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆30Oct 9, 2026Updated 3 weeks ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆136Updated this week
- RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.☆20Oct 15, 2026Updated 2 weeks ago
- AnnData interoperability in R☆201Updated this week
- Biology-centered data-driven quality control for scRNA-seq☆22May 22, 2023Updated 3 years ago
- R Data Deserialization in python☆15Sep 30, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package BioPred☆11Jun 7, 2024Updated 2 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆139Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆164Sep 18, 2026Updated last month
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- ☆30Updated this week
- ☆51Apr 8, 2025Updated last year
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week