Pareto Task Inference in Python
☆22Jul 15, 2026Updated this week
Alternatives and similar repositories for ParTIpy
Users that are interested in ParTIpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An AnnData-based framework for integrated proteomics analysis☆28Jul 8, 2026Updated last week
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated last year
- Robust and scalable single-cell signature scoring☆28Jun 4, 2026Updated last month
- ☆29Updated this week
- LLM-powered personalized daily lists of scientific papers☆132Jan 13, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 weeks ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆88Jun 17, 2026Updated last month
- ☆15Jun 27, 2025Updated last year
- factor models for omics data☆44Updated this week
- Python bindings for SingleR☆16May 6, 2026Updated 2 months ago
- Basics of the OSCA book☆15Sep 29, 2025Updated 9 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 7 months ago
- List of Spatial Transcriptomics related Tools organized per category☆192Updated this week
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆33Aug 20, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single-cell Analysis of Perturbational Effects using Machine Learning☆19Oct 9, 2025Updated 9 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆143Jul 8, 2026Updated last week
- RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.☆20Apr 28, 2026Updated 2 months ago
- ☆49Apr 8, 2025Updated last year
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated last month
- AnnData interoperability in R☆192Updated this week
- Biology-centered data-driven quality control for scRNA-seq☆21May 22, 2023Updated 3 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆134May 8, 2026Updated 2 months ago
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Python package for integrating, processing, and analyzing incomplete multi-modal datasets.☆26Jul 7, 2026Updated last week
- Single-cell spatial omics analysis that makes you happy!☆70Jul 13, 2026Updated last week
- ☆31Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆71Updated this week
- Unified knowledge-driven network inference from omics data☆105Jun 14, 2026Updated last month
- Unsupervised Instance Segmentation in Microscopy☆27Apr 3, 2024Updated 2 years ago
- ☆21Jul 10, 2026Updated last week
- This repository contains scNotebooks, a collection of interactive Jupyter and Google Colab notebooks designed to teach and practice singl…☆133Updated this week
- ☆23Jan 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆34Jun 27, 2026Updated 3 weeks ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆20May 28, 2026Updated last month
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated last month
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆88Jul 6, 2026Updated 2 weeks ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Updated this week