Alternatives and similar repositories for bioinfokit

Users that are interested in bioinfokit are comparing it to the libraries listed below

• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆648Updated this week
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆258Updated 5 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆831Updated last year
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆399Updated last week
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆234Updated 2 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆336Updated last month
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆481Updated 4 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆395Updated 2 months ago
• owkin / PyDESeq2
  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
  ☆663Updated this week
• DingWB / PyComplexHeatmap
  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
  ☆342Updated 3 weeks ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆344Updated last year
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆488Updated 4 years ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆398Updated last year
• ponnhide / pyCircos
  python Circos
  ☆360Updated last year
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆246Updated 4 months ago
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆581Updated 11 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆169Updated 4 years ago
• PacktPublishing / Bioinformatics-with-Python-Cookbook-Second-Edition
  Bioinformatics with Python Cookbook Second Edition, published by Packt
  ☆314Updated 3 years ago
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated and summarized list of bioinformatics bench-marking papers and resources.
  ☆343Updated 7 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆283Updated last month
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆233Updated 6 months ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆726Updated 2 weeks ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆376Updated 2 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆473Updated 2 months ago
• burkesquires / python_biologist
  Python Programming for Biologists
  ☆136Updated 3 months ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆335Updated 2 weeks ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆429Updated this week
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆291Updated 3 weeks ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆183Updated 4 years ago