reneshbedre / bioinfokitLinks
Bioinformatics data analysis and visualization toolkit
☆364Updated last year
Alternatives and similar repositories for bioinfokit
Users that are interested in bioinfokit are comparing it to the libraries listed below
Sorting:
- Gene Set Enrichment Analysis in Python☆682Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆857Updated last year
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆281Updated 10 months ago
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆364Updated 2 months ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆709Updated last week
- Performant Pythonic GenomicRanges☆492Updated 2 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated last week
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆396Updated 4 months ago
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆350Updated last month
- Workshops presented by the Gladstone Bioinformatics Core☆242Updated last month
- RNA-seq workflow using STAR and DESeq2☆351Updated last week
- Bioinformatics with Python Cookbook Second Edition, published by Packt☆317Updated 4 years ago
- python Circos☆371Updated last year
- genes and genomes at your fingertips☆406Updated 3 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated 3 weeks ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated 3 weeks ago
- GTEx & TOPMed data production and analysis pipelines☆390Updated 3 months ago
- ☆406Updated 3 years ago
- ☆443Updated 5 years ago
- Bioinformatics one liners from Ming Tang☆500Updated 5 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆174Updated 4 years ago
- A tool to find sequencing data and metadata from public databases.☆592Updated last year
- Examples of single-cell genomic analysis accelerated with RAPIDS☆346Updated 4 months ago
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆397Updated 4 months ago
- Materials for short, half-day workshops☆342Updated last month
- A python extension for quick access to bigWig and bigBed files☆238Updated 11 months ago
- Multi-Omics Factor Analysis☆367Updated 2 weeks ago
- muon is a multimodal omics Python framework☆257Updated 3 weeks ago
- Python Programming for Biologists☆142Updated 2 weeks ago