Alternatives and similar repositories for bioinfokit:

Users that are interested in bioinfokit are comparing it to the libraries listed below

• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆605Updated this week
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆240Updated 3 weeks ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆797Updated 8 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆337Updated 7 months ago
• hbctraining / DGE_workshop
  ☆386Updated 3 years ago
• owkin / PyDESeq2
  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
  ☆628Updated this week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆393Updated last week
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆391Updated 3 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆323Updated 3 weeks ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆166Updated 3 years ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆386Updated 2 weeks ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆454Updated this week
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆233Updated 2 weeks ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆464Updated 4 years ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆205Updated last month
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆221Updated last week
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆204Updated last week
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆430Updated 2 weeks ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆760Updated 10 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆280Updated this week
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆149Updated last year
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 4 years ago
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆205Updated this week
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆387Updated last month
• DingWB / PyComplexHeatmap
  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
  ☆312Updated last week
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆453Updated 3 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆567Updated 7 months ago
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆678Updated last week
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆131Updated last month
• fayjustin / computational_biology
  course material
  ☆124Updated 2 years ago