Alternatives and similar repositories for bioinfokit

Users that are interested in bioinfokit are comparing it to the libraries listed below

• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆687Updated last month
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆284Updated 11 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆862Updated last year
• scverse / PyDESeq2
  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
  ☆717Updated this week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆396Updated last week
• DingWB / PyComplexHeatmap
  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
  ☆365Updated 3 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆405Updated 3 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆493Updated 2 weeks ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆399Updated 5 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆592Updated last year
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆249Updated last month
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 5 years ago
• Illumina / SpliceAI
  A deep learning-based tool to identify splice variants
  ☆477Updated 6 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆174Updated 4 years ago
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆440Updated last month
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆348Updated last month
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆351Updated last month
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆243Updated this week
• tanghaibao / goatools
  Python library to handle Gene Ontology (GO) terms
  ☆874Updated last month
• ponnhide / pyCircos
  python Circos
  ☆372Updated last year
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆392Updated 4 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆440Updated 5 months ago
• hbctraining / DGE_workshop
  ☆407Updated 4 years ago
• PacktPublishing / Bioinformatics-with-Python-Cookbook-Second-Edition
  Bioinformatics with Python Cookbook Second Edition, published by Packt
  ☆317Updated 4 years ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆239Updated last week
• burkesquires / python_biologist
  Python Programming for Biologists
  ☆144Updated last month
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆752Updated 6 months ago
• BioinformaticsFMRP / TCGAbiolinks
  TCGAbiolinks
  ☆342Updated 3 months ago
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated and summarized list of bioinformatics bench-marking papers and resources.
  ☆352Updated 2 months ago