Alternatives and similar repositories for OncLLMExtraction

Users that are interested in OncLLMExtraction are comparing it to the libraries listed below

• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆45Updated last year
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆62Updated last week
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆143Updated 10 months ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆118Updated last year
• paulhager / MIMIC-Clinical-Decision-Making-Framework
  Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.
  ☆38Updated 4 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated last month
• hiesingerlab / almanac-retrieval
  Almanac: Retrieval-Augmented Language Models for Clinical Medicine
  ☆33Updated last year
• som-shahlab / motor_tutorial
  Tutorial repository for the official MOTOR release
  ☆14Updated 4 months ago
• paulhager / MIMIC-Clinical-Decision-Making-Dataset
  Code repository to create the MIMIC-CDM Dataset.
  ☆34Updated 4 months ago
• pmc-patients / pmc-patients
  PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…
  ☆67Updated last year
• ncbi-nlp / TrialGPT
  Code and data for TrialGPT.
  ☆110Updated 5 months ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆176Updated 2 weeks ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆144Updated this week
• Dyke-F / RAG_Medical_Guidelines
  Vector Guideline Comparison for Medical Oncology
  ☆33Updated last year
• zhao-zy15 / PMC-Patients
  PMC-Patients
  ☆97Updated last year
• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆26Updated 2 weeks ago
• starmpcc / Asclepius
  Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
  ☆106Updated 10 months ago
• I2C9W / fromtexttotables
  Leveraging
  ☆13Updated last year
• luoyuanlab / Clinical-Longformer
  ☆61Updated last year
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• som-shahlab / medalign
  MedAlign is a clinician-generated dataset for instruction following with electronic medical records.
  ☆94Updated last month
• Lybarger / sdoh_extraction
  ☆18Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆81Updated last month
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆94Updated last year
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆62Updated last month
• MiuLab / PLM-ICD
  PLM-ICD: Automatic ICD Coding with Pretrained Language Models
  ☆69Updated last year
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆25Updated last week
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• DATEXIS / UMLSParser
  Python module to parse UMLS source files
  ☆19Updated 2 years ago
• RyanWangZf / PyTrial
  PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development
  ☆107Updated last year