MadhumitaSushil / OncLLMExtraction
Expert-Curated Oncology Reports to Advance Language Model Inference
☆27Updated last year
Alternatives and similar repositories for OncLLMExtraction:
Users that are interested in OncLLMExtraction are comparing it to the libraries listed below
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆59Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated last week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆164Updated 2 months ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆31Updated last year
- Clinical text summarization by adapting large language models☆141Updated 9 months ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆66Updated last year
- Code and data for TrialGPT.☆95Updated 3 months ago
- Vector Guideline Comparison for Medical Oncology☆30Updated 11 months ago
- all scripts used in gatortron project☆116Updated last year
- ☆25Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago
- ☆59Updated last year
- PMC-Patients☆96Updated 10 months ago
- Code repository to create the MIMIC-CDM Dataset.☆31Updated 2 months ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆37Updated 2 months ago
- Taking off-the-shelf HuggingFace models and training them on EHR data☆24Updated last month
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last year
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆106Updated 8 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆140Updated 2 weeks ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆28Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆33Updated last year
- ☆65Updated last month
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆58Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- This is Clinfo.AI Demo Instruction☆34Updated 8 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated 2 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…☆18Updated last year