Expert-Curated Oncology Reports to Advance Language Model Inference
☆33Apr 17, 2024Updated last year
Alternatives and similar repositories for OncLLMExtraction
Users that are interested in OncLLMExtraction are comparing it to the libraries listed below
Sorting:
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Jan 2, 2024Updated 2 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆50Jan 11, 2024Updated 2 years ago
- Hands-on repository for fine-tuning Large Language Models (LLMs) in the clinical domain with tutorials☆13Jan 9, 2026Updated last month
- A Python Natural Language Processing Toolkit for Electronic Health Record Texts☆13May 24, 2023Updated 2 years ago
- Zero-shot clinical trial matching with LLMs☆16Mar 1, 2025Updated last year
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆114Aug 22, 2024Updated last year
- Training HuggingFace models on EHR data☆43Nov 2, 2025Updated 4 months ago
- Fact Verification for Clinical Notes with LLMs☆39Dec 22, 2025Updated 2 months ago
- A curated collection of cutting-edge research at the intersection of machine learning and healthcare. This repository will be actively ma…☆34Mar 1, 2026Updated last week
- Oncology Working Group Repository☆60Dec 31, 2025Updated 2 months ago
- ☆12Sep 2, 2024Updated last year
- A private and secure generative AI tool, based on GPT and o models, deployed for non-clinical use at Dana-Farber Cancer Institute☆65Jan 28, 2025Updated last year
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆17Jul 20, 2025Updated 7 months ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆98May 17, 2025Updated 9 months ago
- [NeurIPS 2024 D&B] Official code for "EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries"☆41Jan 11, 2025Updated last year
- ☆63Jul 4, 2023Updated 2 years ago
- [ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation wi…☆41Jun 23, 2024Updated last year
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆78Jul 1, 2025Updated 8 months ago
- Official repository of "EHR-SeqSQL : A Sequential Text-to-SQL Dataset For Interactively Exploring Electronic Health Records" (ACL 2024 Fi…☆17Jul 5, 2024Updated last year
- Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…☆18Aug 27, 2023Updated 2 years ago
- Repository for the paper 'Enhancing Clinical Decision Support with Physiological Waveforms — A Multimodal Benchmark in Emergency Care'.☆22Apr 30, 2025Updated 10 months ago
- Code and data for TrialGPT.☆145Jan 24, 2025Updated last year
- ☆18Apr 8, 2024Updated last year
- Implementation of the paper: "Turning Tables: Generating Examples from Semi-structured Tables for Endowing Language Models with Reasoning…☆22Nov 2, 2021Updated 4 years ago
- DiReCT: Diagnostic Reasoning for Clinical Notes via Large Language Models (NeurIPS 2024 D&B Track)☆23Mar 6, 2025Updated last year
- ☆45Updated this week
- A Unified Framework for Benchmarking Generative Electrocardiogram-Language Models (ELMs)☆42Feb 23, 2026Updated last week
- Radiation Oncology NLP Database☆25Oct 9, 2024Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆210Jun 6, 2025Updated 9 months ago
- ☆52Jun 23, 2024Updated last year
- Code for the paper "ClinicalBench: Can LLMs Beat Traditional ML Models in Clinical Prediction?"☆31Jun 18, 2025Updated 8 months ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated 2 years ago
- A Paper collection for LLM based Patient Simulators☆103Jan 7, 2026Updated 2 months ago
- ☆48Feb 26, 2025Updated last year
- [NeurIPS 2024] RaVL: Discovering and Mitigating Spurious Correlations in Fine-Tuned Vision-Language Models☆31Nov 12, 2024Updated last year
- ☆25Jan 15, 2024Updated 2 years ago
- CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering☆23Feb 26, 2021Updated 5 years ago
- [CHIL 2024] Interpretation of Intracardiac Electrograms Through Textual Representations☆12Sep 4, 2024Updated last year
- 🩺Build a deep learning model to detect the presence of pacemakers in ECG signals☆28Aug 11, 2025Updated 6 months ago