MadhumitaSushil / OncLLMExtractionLinks
Expert-Curated Oncology Reports to Advance Language Model Inference
☆28Updated last year
Alternatives and similar repositories for OncLLMExtraction
Users that are interested in OncLLMExtraction are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆62Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated last week
- Clinical text summarization by adapting large language models☆143Updated 10 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆66Updated last year
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆37Updated 3 months ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆33Updated last year
- all scripts used in gatortron project☆118Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆174Updated this week
- Vector Guideline Comparison for Medical Oncology☆32Updated last year
- PMC-Patients☆96Updated 11 months ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated 2 weeks ago
- Tutorial repository for the official MOTOR release☆13Updated 3 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆142Updated last month
- Code repository to create the MIMIC-CDM Dataset.☆33Updated 3 months ago
- Taking off-the-shelf HuggingFace models and training them on EHR data☆24Updated 2 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated 3 weeks ago
- Code and data for TrialGPT.☆107Updated 4 months ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆79Updated last week
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆105Updated 9 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated 2 weeks ago
- Leveraging☆13Updated last year
- ☆60Updated last year
- A curated list of biomedical knowledge graphs and of resources for their construction.☆48Updated 7 months ago
- ☆70Updated 2 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated last month
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Python module to parse UMLS source files☆19Updated 2 years ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆58Updated 3 weeks ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆112Updated last year