ncborcherding / escape

Related projects: ⓘ

• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆150Updated 3 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆133Updated 4 months ago
• huayc09 / SeuratExtend
  ☆82Updated 2 weeks ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆174Updated 2 weeks ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆147Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆160Updated 2 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆76Updated 6 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆154Updated 3 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆112Updated 2 weeks ago
• neurorestore / Libra
  ☆144Updated 3 weeks ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆146Updated 2 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆201Updated this week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆170Updated last month
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆172Updated this week
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated last month
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆116Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆106Updated 5 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆90Updated last week
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆186Updated last month
• timoast / sinto
  Tools for single-cell data processing
  ☆117Updated 3 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆149Updated this week
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆81Updated 3 years ago
• rpolicastro / scProportionTest
  ☆56Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆154Updated last week
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆86Updated last year
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆109Updated 3 weeks ago
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆146Updated 3 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆121Updated 6 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆90Updated 3 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆145Updated 2 months ago