Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
☆22May 3, 2025Updated 10 months ago
Alternatives and similar repositories for PLM_SWE
Users that are interested in PLM_SWE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLIP-based model for aligning epitopes to immune receptors☆12Apr 30, 2025Updated 11 months ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆63Aug 29, 2025Updated 7 months ago
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆27Sep 19, 2025Updated 6 months ago
- PLMFit platform for TL on PLMs☆20Aug 13, 2025Updated 7 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆19Aug 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆12Aug 18, 2025Updated 7 months ago
- ☆117Mar 14, 2026Updated 2 weeks ago
- ☆12Aug 30, 2025Updated 6 months ago
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆35Oct 17, 2025Updated 5 months ago
- Integrating Molecular Simulation and Experimental Data☆26Sep 19, 2021Updated 4 years ago
- ☆123Feb 20, 2026Updated last month
- Tree-Based Diffusion Schrödinger Bridge with Applications to Wasserstein Barycenters☆10Mar 5, 2024Updated 2 years ago
- ☆15Jul 21, 2025Updated 8 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆31Nov 23, 2025Updated 4 months ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- ☆13Jul 25, 2023Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- ☆13Sep 13, 2023Updated 2 years ago
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last month
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- ☆45Apr 1, 2025Updated 11 months ago
- ☆40Mar 16, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆28Nov 20, 2025Updated 4 months ago
- Implementation of our ICLR2023 paper "Spherical-Sliced Wasserstein"☆14Feb 24, 2026Updated last month
- Simple Python package to calculate ROC AUC with confidence intervals using DeLong’s method☆22Mar 9, 2026Updated 3 weeks ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆12Feb 20, 2024Updated 2 years ago
- Code for "Score-based Generative Modeling Secretly Minimizes the Wasserstein Distance", NeurIPS 2022☆17Feb 11, 2023Updated 3 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆29Jan 8, 2024Updated 2 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- nanobody melting temperature prediction using protein embeddings☆11Feb 24, 2025Updated last year
- ☆256Jul 31, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Constant pH simulation with OpenMM☆19Mar 10, 2026Updated 2 weeks ago
- ☆11Aug 26, 2024Updated last year
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆77Feb 2, 2026Updated last month
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- Contributed and additional nodes for maize☆21Feb 18, 2026Updated last month
- ☆37Mar 30, 2025Updated last year