Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
☆25May 3, 2025Updated last year
Alternatives and similar repositories for PLM_SWE
Users that are interested in PLM_SWE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLIP-based model for aligning epitopes to immune receptors☆11Apr 30, 2025Updated last year
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆19Jun 11, 2025Updated last year
- ☆12Updated this week
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 5 months ago
- The data and standalone program of ESM-DBP☆10Jun 25, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆27Sep 19, 2025Updated 11 months ago
- ☆39Nov 23, 2025Updated 9 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆20Aug 24, 2024Updated 2 years ago
- ☆13Aug 30, 2025Updated last year
- Integrating Molecular Simulation and Experimental Data☆27Sep 19, 2021Updated 4 years ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- Official Pytorch implementation for "Tree-Based Diffusion Schrödinger Bridge with Applications to Wasserstein Barycenters" (NeurIPS 2023)☆10Mar 5, 2024Updated 2 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆73Aug 29, 2025Updated last year
- ☆44Aug 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆134May 19, 2026Updated 3 months ago
- Protein language model trained on coding DNA☆55Oct 20, 2024Updated last year
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆17Aug 18, 2025Updated last year
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆37Jul 15, 2026Updated last month
- An antibody-specific language model focusing on NGL prediction☆31Mar 8, 2025Updated last year
- ☆13Jul 25, 2023Updated 3 years ago
- Code for TR2-D2: Tree Search Guided Trajectory-Aware Fine-Tuning for Discrete Diffusion☆23Feb 12, 2026Updated 6 months ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.☆16Jun 22, 2026Updated 2 months ago
- Steering discrete diffusion models with labeled data for protein fitness optimization☆31Nov 1, 2025Updated 10 months ago
- ☆55Apr 1, 2025Updated last year
- PLMFit platform for TL on PLMs☆22Aug 13, 2025Updated last year
- ☆13Sep 13, 2023Updated 2 years ago
- [Neurips 2025] Official Implementation of ConfRover models☆30Feb 3, 2026Updated 7 months ago
- ☆17Mar 19, 2026Updated 5 months ago
- Template-based protein design with Raygun☆151Jul 30, 2026Updated last month
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready c…☆35Jun 8, 2026Updated 2 months ago
- Detection of remote homology by comparison of protein language model representations☆65Dec 16, 2024Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated last year
- ☆42Aug 20, 2026Updated 2 weeks ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Examples and data for performing path similarity analysis (PSA).☆18Oct 23, 2015Updated 10 years ago
- Implementation of our ICLR2023 paper "Spherical-Sliced Wasserstein"☆15Feb 24, 2026Updated 6 months ago