navid-naderi / PLM_SWE
Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
☆16Updated last month
Alternatives and similar repositories for PLM_SWE:
Users that are interested in PLM_SWE are comparing it to the libraries listed below
- ☆16Updated 3 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆16Updated last month
- ☆32Updated 4 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆21Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆15Updated 11 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 8 months ago
- ☆17Updated last month
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- ☆21Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated 11 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆23Updated last month
- dMaSIF implementation for google colab☆29Updated last year
- Efficient implementatin of ESM family.☆48Updated this week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆40Updated last month
- Implementation of Protein Invariant Point Packer (PIPPack)☆31Updated 8 months ago
- ☆11Updated last month
- Augmenting zero-shot mutant prediction by retrieval-based logits fusion.☆33Updated 2 weeks ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆30Updated this week
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆21Updated last year
- Code for humanization of antibody and nanobody☆34Updated 2 months ago
- ☆19Updated 3 weeks ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆54Updated 8 months ago
- protein backbone refinement☆15Updated 4 months ago
- Generative diverse protein backbones by protein language model☆29Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆30Updated 2 months ago
- ☆26Updated 3 months ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Updated 5 months ago
- ☆60Updated last month
- Adapting protein language models for structure-conditioned design☆34Updated 5 months ago