fdechaumont / lmt-analysisLinks
Live Mouse Tracker analysis
☆31Updated last month
Alternatives and similar repositories for lmt-analysis
Users that are interested in lmt-analysis are comparing it to the libraries listed below
Sorting:
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆58Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ☆34Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- ☆52Updated 10 months ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- A Python interface to access neuroanatomical atlases☆154Updated last week
- Brainways☆18Updated last month
- ☆8Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- analysis tools for large-scale neural recordings☆14Updated 3 months ago
- Match suite2p ROIs between imaging sessions☆26Updated 6 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 9 months ago
- 3-D imaging visualisation through slicing☆30Updated 6 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated 2 weeks ago
- Browser-based NWB visualization and DANDI exploration☆59Updated 2 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last week
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆33Updated 4 years ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆56Updated 6 months ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆101Updated this week
- Anatomical space conventions made easy.☆10Updated last week
- A modular package to control stimulation and track behaviour☆46Updated 8 months ago