fdechaumont / lmt-analysis
Live Mouse Tracker analysis
☆24Updated this week
Related projects ⓘ
Alternatives and complementary repositories for lmt-analysis
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated last week
- Repository for BehaviorDEPOT pipeline app files and source code☆35Updated last month
- ☆51Updated 2 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆52Updated last year
- ☆31Updated last year
- Segmentation of anatomical structures in a common coordinate space☆28Updated last week
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago
- ☆20Updated 3 months ago
- Demo code for CAPTURE and DANNCE☆27Updated 3 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆64Updated 2 weeks ago
- Fiber Photometry Modular Analysis Tool Suite☆34Updated 3 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated 11 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated 10 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆52Updated 3 weeks ago
- ☆25Updated 4 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated last week
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 8 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆51Updated 6 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆50Updated 3 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆28Updated last year
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆31Updated 3 years ago
- ☆18Updated 2 years ago
- Standalone utilities for SLEAP pose tracking data.☆13Updated last week
- ☆19Updated 9 months ago
- A tool to streamline extracellular electrophysiology analysis using SpikeInterface☆13Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated 11 months ago
- Brainways☆14Updated last week
- Histology processing☆64Updated 8 months ago
- ☆14Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆91Updated 4 months ago