Alternatives and similar repositories for lmt-analysis

Users that are interested in lmt-analysis are comparing it to the libraries listed below

• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated last week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated last week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• neuroinformatics-unit / NeuroBlueprint
  Lightweight data specification for systems neuroscience, inspired by BIDS.
  ☆19Updated last week
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated 2 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆140Updated this week
• bkntr / brainways
  Brainways
  ☆22Updated 3 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated 2 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆61Updated 2 years ago
• brainglobe / brainglobe.github.io
  brainglobe.info website
  ☆11Updated last week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆15Updated last week
• flatironinstitute / dendro-old
  Analyze neuroscience data in the cloud
  ☆19Updated last year
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆12Updated last week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆167Updated this week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆31Updated 10 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• INCF / neuroscience-data-structure
  Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …
  ☆23Updated 2 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 2 weeks ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 5 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆157Updated 2 weeks ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated this week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆24Updated this week