NGS read simulator
☆11Oct 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for holodeck
Users that are interested in holodeck are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast SAM/BAM sorter.☆12Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆31Nov 2, 2026Updated last week
- Fast, highly accurate, read-trimming for NGS data.☆26Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Blazingly fast, streaming duplicate detection for NGS data☆22Updated this week
- Utilities to manipulate pangenome collections using multi-MUMs☆20Updated this week
- ☆10Jan 20, 2026Updated 9 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆14Oct 26, 2026Updated 2 weeks ago
- Spiritual successor to picard for sequencing qc☆65Oct 22, 2026Updated 2 weeks ago
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- ☆18Oct 12, 2026Updated 3 weeks ago
- ☆19Jul 15, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A terminal dashboard for realtime Slurm monitoring☆23Aug 24, 2026Updated 2 months ago
- Callable Loci... and more☆26Updated this week
- Parsing and evaluating gene annotation and spliced alignment☆31Jul 22, 2025Updated last year
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆30Oct 20, 2026Updated 2 weeks ago
- expressions on VCFs☆95Sep 25, 2026Updated last month
- Point Cloud Local Ancestry Inference (PCLAI) on HPRC Release 2 samples☆12Mar 26, 2026Updated 7 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- A better, faster way to count guides in CRISPR screens.☆36Apr 30, 2026Updated 6 months ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Git for genomes☆38Updated this week
- A manifesto for AI-assisted modernisation of bioinformatics software.☆60Oct 26, 2026Updated 2 weeks ago
- Per-base per-nucleotide depth analysis☆153Oct 31, 2026Updated last week
- Efficient querying of biological databases☆45Oct 27, 2025Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 4 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆24Oct 29, 2026Updated last week
- Fast aligner for long reads (Rust): Oxford Nanopore DNA, direct RNA and cDNA, and PacBio HiFi. minimap2-level accuracy, 2.6-8x faster☆16Oct 29, 2026Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆58Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Jul 2, 2026Updated 4 months ago
- Accelerated short-read alignment, derived from bwa-mem2 — drop-in replacement with correctness fixes, performance improvements, single-bi…☆63Updated this week
- An argument parsing library for Scala☆12May 19, 2026Updated 5 months ago
- A high-performance HGVS variant nomenclature parser and normalizer written in Rust☆31Updated this week
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆86Oct 27, 2026Updated 2 weeks ago
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
Are these results useful?