mozack / ubu
UNC-Chapel Hill Bioinformatics Utilities
☆24Updated 9 years ago
Alternatives and similar repositories for ubu:
Users that are interested in ubu are comparing it to the libraries listed below
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- ☆25Updated 11 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Genomic Association Tester☆31Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 4 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- ☆33Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- An automated RNA-seq pipeline using Nextflow☆37Updated 7 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month