mirnavazquez / RbiMsLinks
R tools for reconstructing metabolisms.
☆14Updated this week
Alternatives and similar repositories for RbiMs
Users that are interested in RbiMs are comparing it to the libraries listed below
Sorting:
- dada2 formatted nifH database☆12Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- Utilities for community ecology analysis☆19Updated 4 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated last year
- ☆55Updated last week
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 10 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last month
- MetaCompare☆19Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- ☆40Updated last year
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Speedy versions of phyloseq functions☆47Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆86Updated 7 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 2 weeks ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- Sydney Phylogenetics Workshop☆66Updated 2 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Using ggtree to build phylogenetic trees☆49Updated 10 months ago
- ☆17Updated this week
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated 3 weeks ago
- ☆17Updated 2 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated last month
- Transform files to the microtable object with microeco package☆28Updated last month
- ☆50Updated 4 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago