Alternatives and similar repositories for RbiMs

Users that are interested in RbiMs are comparing it to the libraries listed below

• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆12Updated last year
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆31Updated last year
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆45Updated 2 years ago
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆16Updated last year
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 4 years ago
• statdivlab / radEmu
  ☆56Updated 3 weeks ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆47Updated 9 months ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆19Updated last year
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆34Updated last week
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• ukaraoz / microtrait
  ☆40Updated last year
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 5 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆16Updated last month
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆25Updated 5 years ago
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆120Updated last year
• ChiLiubio / meconetcomp
  Compare microbial co-occurrence networks based on the trans_network class of microeco package
  ☆10Updated 3 months ago
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated last year
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆66Updated last month
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆29Updated last week
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• ErnakovichLab / dada2_ernakovichlab
  ☆17Updated this week
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆48Updated 9 months ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆22Updated 5 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆69Updated last year