mirnavazquez / RbiMs
R tools for reconstructing metabolisms.
☆14Updated last month
Alternatives and similar repositories for RbiMs:
Users that are interested in RbiMs are comparing it to the libraries listed below
- Utilities for community ecology analysis☆18Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- dada2 formatted nifH database☆11Updated 8 months ago
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- Speedy versions of phyloseq functions☆46Updated 8 months ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆21Updated last year
- Look Up Guild Information for Fungi in R☆19Updated last year
- Miscellaneous functions for metagenomic analysis.☆47Updated 6 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- ☆51Updated this week
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆30Updated this week
- ☆14Updated this week
- functions for analyzing phyloseq data☆26Updated last week
- JAMP - Just Another Metabarcoding Pipeline☆32Updated 3 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 6 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆14Updated last year
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Transform files to the microtable object with microeco package☆24Updated last month
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆40Updated 2 months ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year