Alternatives and similar repositories for RbiMs

Users that are interested in RbiMs are comparing it to the libraries listed below

• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆33Updated last year
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆13Updated last year
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 5 years ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆36Updated this week
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆21Updated 2 years ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆19Updated last year
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated 4 months ago
• ukaraoz / microtrait
  ☆47Updated last year
• statdivlab / radEmu
  ☆63Updated last month
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 3 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆92Updated 4 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆73Updated 3 years ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆50Updated last year
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 5 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆53Updated last month
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆68Updated 7 months ago
• ErnakovichLab / dada2_ernakovichlab
  ☆19Updated this week
• ericcapo / marky-coco
  Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
  ☆10Updated last year
• ChiLiubio / meconetcomp
  Compare microbial co-occurrence networks based on the trans_network class of microeco package
  ☆12Updated last month
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated 5 months ago
• qichao1984 / NCyc
  ☆53Updated 5 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated 2 years ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆89Updated last year
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆50Updated last year
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆67Updated this week
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆17Updated 6 months ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆23Updated 10 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 3 months ago
• SvetlanaUP / Microbiome-conferences-c
  This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
  ☆62Updated last week