mirnavazquez / RbiMsLinks
R tools for reconstructing metabolisms.
☆14Updated last month
Alternatives and similar repositories for RbiMs
Users that are interested in RbiMs are comparing it to the libraries listed below
Sorting:
- dada2 formatted nifH database☆12Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Utilities for community ecology analysis☆19Updated 5 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 2 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 11 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Various functions for analysis of microbial community data☆46Updated last month
- ☆41Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- ☆58Updated last month
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- MetaCompare☆19Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆87Updated last month
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last month
- ☆18Updated this week
- ☆50Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated this week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Sydney Phylogenetics Workshop☆66Updated 3 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 3 months ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆11Updated 3 weeks ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last week
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago